SVETKA, a program for Analysis of Multiple Sequence Alignments . ... T his is a database of some analysed "model" alignments. These sets of amino acid sequences were taken from COGs database . ... Results of the analysis of "model" alignments are acceptable from the table below. Every alignment is called VAL xxxx , where xxxx is the number of the original COG (e.g. VAL1188 is obtained from COG1188 ). Alignment name . ... of sequences . Alignment length . Alignment quality . ...

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• SDP home page
• SVETKA, a program for multiple sequence alignments analysis
• SDPpred

... Число консервативных позиций заметно увеличилось. если до выравнивания наверняка нельзя было сказать ничего о гомологичности последовательностей, то после выравнивания это заметно сразу. ... fibronectin type 3 domain-containing protein [Sanguibacter keddieii DSM 10542] . ... rhamnogalacturonan lyase [Streptomyces avermitilis MA-4680]. множественное выравнивание своего белка и всех найденных гомологов в GeneDoc . ... от (lcl|80906, 165) и до (lcl|80906, 204); . ...

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• SDPpred
• Multiple alignment
• Task 2-8. Multiple alignment

SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

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• Blocks finder

Задача получить выравнивание вирусных белков, называемых "малыми дельта-антигенами", посредством программы muscle (читается "массл") и посмотреть на него в GeneDoc. ... Импортируйте файл в GeneDoc. ... Попробуйте разобраться с другими программами выравнивания, установленными на kodomo-count, а именно mafft и/или edialign . ... Посмотреть список программ пакета EMBOSS, имеющих отношения к выравниваниям, можно, выполнив команду wossname alignment Описание конкретной программы выдает программа tfm . ...

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• Help to practice 9 (multiple alignment)
• Task 8 (Multiple alignment)
• Help to practice 8 (multiple alignment)

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• ConClus

... Many protein families contain homologous proteins that have a common biological function but different specificity. Given a multiple sequence alignment of a family divided into specificity groups, SDPpred predicts a set of alignment positions ( SDP, Specificity-Determining Positions ) that determine differences in the functional specificity. ... 2004) Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families. ...

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• RNA Alignment
• SDPlight
• SDPsite

... There are many methods for reconstruction of phylogeny from multiple protein sequence alignments. ... In this work we tried to create expert systems that predict: 1) if the data is good for phylogeny reconstruction by Fitch ­ Margolish (FM) method; 2) which method would work better: FM or UPGMA. ... We used two species sets, first containing 27 Fungi species and second containing 25 Metazoa species. ... From the entire set of alignments, two subsets were extracted, called "good" and "bad". ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/167.pdf

# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 EBO_DESCRIPTION="Clustal Omega - Scalable multiple protein sequences alignment" AUTOTOOLS_AUTORECONF=1 inherit emboss-r1 KEYWORDS="amd64 x86 ~x86-linux ~ppc-macos" RDEPEND+=" sci-biology/clustal-omega" PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )

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• http://mirror.msu.net/pub/gentoo-portage/sci-biology/clustalw/clustalw-2.1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/clustalw/clustalw-1.83-r3.ebuild

Roman Sutormin rsutormin@gmail.com Professional experience 05/2013 ­ present: Lawrence Berkeley National Laboratory (Berkeley, CA, USA) Software developer Development of JSON based storage system used for keeping biological data involved in public KBase services. ... 10/2009 ­ 08/2011: Mail.Ru Group (Moscow, Russia), Software developer Support and development of data warehouse (PostgreSQL) and administration web tool (JBoss + GWT) on serverside of MMO game "Allods Online". ... 2013 Jul 1514(1):476. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2013.pdf
• http://storage.bioinf.fbb.msu.ru/~mazin/laci.fasta
• http://storage.bioinf.fbb.msu.ru/~roman/mol_biol_mosk_2006.pdf

It is now possible to specify multiple log files, each with a fully customizable format. ... Multiple log files are implemented as part of the mod_log_config module which as of Apache 1.2 is the default log module. Multiple log files be created with either the TransferLog or CustomLog directive. These directives can be repeated to create more than one log file (in previous releases, only one logfile could be given per server configuration). ... Syntax: CustomLog filename "format" . ...

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• Configuring Multiple IP Addresses
• Apache IP-based Virtual Host Support

... Handling file uploads . ... Multiple files can be uploaded using different name for input . ... form action="file-upload.php" method="post" enctype="multipart/form-data"> Send these files:<br> <input name="userfile[]" type="file"><br> <input name="userfile[]" type="file"><br> <input type="submit" value="Send files"> </form> . ... In this case, $HTTP_POST_FILES['userfile']['name'][0] would contain the value review.html , and $HTTP_POST_FILES['userfile']['name'][1] would contain the value xwp.out . ...

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• Configuring Multiple IP Addresses
• sesam_field_array

... About lab . ... Multiple object detection . ... Online Journal "Computer graphics and multimedia" (in russian) . ... To detect multiple objects of interest, the methods based on Hough transform use non-maxima supression or mode seeking in order to locate and to distinguish peaks in Hough images. ... Iterations of the Hough-like algorithm for multiple object instances detection: . ... Barinova O, Lempitsky V, Kohli P. On detection of multiple object instances using Hough transform . ...

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• On detection of multiple object instances using Hough transform | Graphics and
• On detection of multiple object instances using Hough transform | Лаборатория
• Fully Automatic Multiple PTZ Cameras Calibration Method | Graphics and Media...

It is now possible to specify multiple log files, each with a fully customizable format. ... Multiple log files are implemented as part of the mod_log_config module which as of Apache 1.2 is the default log module. Multiple log files be created with either the TransferLog or CustomLog directive. These directives can be repeated to create more than one log file (in previous releases, only one logfile could be given per server configuration). ... Syntax: CustomLog filename "format" . ...

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• Qt Toolkit - QGroupBox Class
• Qt Toolkit - QGridLayout Class
• Configuring Multiple IP Addresses

. Starting version 0.9.7, the calendar is able to handle multiple dates selection, in either flat or popup form. For this to happen one needs to pass the " multiple: true " parameter to Calendar.setup and to install an onUpdate handler that watches for modifications. [open calendar...] . mishoo Last modified: Thu Mar 3 20:17:42 EET 2005

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• %TOPICTITLE% (8 vs. 9) - TWiki
• %TOPICTITLE% (2 vs. 3) - TWiki
• TWikiForms - TWiki - TWiki

. Next: Thomson's method of spectral Up: THE CHIRPLET Previous: Continuous Chirplet Transform (CCT) . љ . Thomson's method of spectral estimation . True rectangular tiling of the TF plane . Pyramidal (multiresolution) true-rectangular TF tiling . Parallelogram-shaped tilings of the TF plane . The pyramidal (multi-resolution) CCT . Steve Mann . Thu Jan 8 19:50:27 EST 1998

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• Parallelogram-shaped tilings of the TF plane
• Thomson's method of spectral estimation
• Long description of example illustrating table row height calculations and

... Properties of the monomeric form of human 14-3-3zeta protein and its interaction with tau and HspB6. ... Using WMW and MMW mutants, we show that the monomeric form interacts with the tau protein and with the HspB6 protein, in both cases forming complexes with a 1:1 stoichiometry, in contrast to the 2:1 and/or 2:2 complexes formed by wild-type 14-3-3. Significantly, this interaction requires phosphorylation of tau protein and HspB6. ...

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. To print multiple copies of a file use the # (hash) option. For example: lpr -#3 memo.txt . This prints three copies of the file memo.txt on your default printer. You can also print multiple copies of several files. For example: lpr -Pps1 -#3 survey.doc letter.txt . This prints three copies of the files survey.doc and letter.txt on the printer ps1 . Tip ...

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• Removing multiple occurrences of a line
• Using multiple options
• Examples of using multiple options

... Generation of octree meshes with cut cells in multiple material domains" . Chernyshenko A.Yu. An algorithm for the generation of octree meshes with cut cells generation in complex multiple material domains is proposed. The method of cell cutting is based on the cubical marching squares and multiple material marching cubes algorithms. ... Keywords: octree meshes, cut cells, hexahedral meshes, polyhedral meshes . PDF (in Russian) (1.57MB) . PDF. zip (in Russian) (1.34MB) . ...

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• "ALIGNMENT IN FREE DECAYING MHD TURBULENCE"
• Flow simulation by the lattice Boltzmann method with multiple-relaxation times

... Главная -> Фильмы -> Multiple Maniacs . ... Фильмы . ... Multiple Maniacs . ... Susan Lowe . ... Paul Swift . Vincent Peranio . ... Ed Peranio . Bob Skidmore . Margie Skidmore . Jack Walsh . Susan Walsh . ... Paul Landis . Mark Lazarus . ... Jack Roberts . Mark Isherwood . ...

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