... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPpred
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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• SDPpred
• Inquiry information || Parsimony algorithm

... Geometry optimization can be performed with analytical gradients at the HF, MP2, CI, DFT, TDHF, and TDDFT levels. ... The table below summarizes the current main capabilities of Firefly : Wavefunction RHF UHF ROHF GVB MCSCF Semiempirical SCF dm dm dm dm - SCF energy cdp cdp cdp cdp cdp SCF gradient cdp cdp cdp cdp cdp SCF Analytical Hessian cdp * - cdp * cdp * - DFT energy cdp cdp cdp - - DFT gradient cdp cdp ...

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Below is a list of additional documentation pages that apply to the Apache web server development project. ... Description of Apache's Application Programming Interface. ... Reading Client Input in Apache 1.2 . Describes differences between Apache 1.1 and 1.2 in how modules read information from the client. ... Notes about Apache's compatibility with the NCSA server. ... Performance Notes (BSD 4.4) . Some notes about ways to improve/optimize Apache performance on BSD 4.4 systems. ...

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Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• Further Information and Bibliography
• SAL- Numerical Analysis - Discrete Methods Related Tools - BoxLib
• authspeed - determine authentication delays

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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Regular algorithms for the analysis of radio-location images" . Ageev A.L., Korshunov M.E. The problem of navigation on the basis of radio-location images is considered. ... In order to solve the navigation problem, it is necessary to determine, with a high accuracy, the coordinates of the point from which an image is formed. ... A new regularization algorithm is proposed to enhance the accuracy of determining the coordinates. ... PostScript (in Russian) (97.4MB) . PDF (in Russian) (5.87MB) . ...

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• "A numerical algorithm for the analysis of viscoelastic waves in the
• "Finite difference schemes for integrating the equations for sample particle
• "Finite-difference and projection-difference schemes for the unsteady motion of

A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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• Screening of pattern or alignment against PROTEIN databank
• Genebee Predicted Annotation
• DIMACS Series in Discrete Mathematics

... Inter-Communication . ... All point-to-point communication described thus far has involved communication between processes that are members of the same group. ... An inter-communication is a point-to-point communication between processes in different groups. The group containing a process that initiates an inter-communication operation is called the ``local group,'' that is, the sender in a send and the receiver in a receive. ... An inter-communicator cannot be used for collective communication. ...

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• Reserved Keys | PARALLEL.RU - Информационно-аналитический центр по параллельным
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... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first ... 22 * self.positions -- sorted list of positions of the project.alignment that . ...

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• allpy: lib/block.py annotate
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• allpy: allpy/fileio.py diff

... A new mouse-eared bat (Mammalia: Chiroptera: Vespertilionidae) from Vietnam . ... A new mouse-eared bat (Mammalia: Chiroptera: Vespertilionidae) from the Myotis 'siligorensis' species group is being described from the Hon Ba Mountain, ca. 30 km WSW of Nha Trang, Khanh Hoa Province, Vietnam (12.1113њ N, 108.953њ E, 1250 m ASL), based on a set of morphological and genetic characters. ... References Download PDF . ... Individuals of Rhinolophus and Miniopterus belong to undetermined species. ...

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• Contribution to age determination of pikas (Lagomorpha, Ochotonidae, Ochotona).
• Mammalian humerus from the Early Cretaceous of West Siberia.
• Rudimentary small upper premolars in the Northern bat, Eptesicus nilssoni

A problem, that can arise when moving from Fortran 77 to Fortran 90, is dependent on a usual deviation from the standard, and has to do especially with user programs. ... With many Fortran 77 implementations we wrote PROGRAM TEST REAL X WRITE(*,10) 10 FORMAT('Give X = ',$) READ(*,*) X WRITE(*,*) X END In Fortran 90 we use "non-advancing I/O" instead. ... In some old Fortran dialects the statement TYPE was used to write on a typewriter terminal and PRINT was used to write on the line printer. ...

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• Long description of example illustrating table row height calculations and
• Performance, Implementation, and Design Notes

Internet Engineering Task Force (IETF) A. Bryan Request for Comments: 5843 April 2010 Category: Informational ISSN: 2070-1721 Additional Hash Algorithms for HTTP Instance Digests Abstract The IANA registry named "Hypertext Transfer Protocol (HTTP) Digest Algorithm Values" defines values for digest algorithms used by Instance Digests in HTTP. ... Bryan Informational [Page 2] RFC 5843 More Algorithms for HTTP Instance Digests April 2010 Reference: [RFC1321], [RFC4648], this document. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc7093.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc7093.txt.pdf

... PHP 4 >= 4.0.0) strnatcmp -- String comparisons using a "natural order" algorithm . ... This function implements a comparison algorithm that orders alphanumeric strings in the way a human being would, this is described as a "natural ordering". ... arr1 = $arr2 = array("img12.png","img10.png","img2.png","img1.png"); echo "Standard string comparison\n"; usort($arr1,"strcmp"); print_r($arr1); echo "\nNatural order string comparison\n"; usort($arr2,"strnatcmp"); print_r($arr2); . ...

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• natcasesort
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SDPpred: Results . ... The number of proteins in the alignment: 21 . The alignment length: 988 . 38 SDPs predicted . Cutoff probability: 1.85e-171 . ... Amino acid residues in SDPs for protein PMS1_HUMAN PMS2_HUMAN PMS2_MOUSE PMS1_SCHPO PMS1_YEAST MUTL_THEMA MUTL_AQUAE MUTL_AQUPY MUTL_BORBU HEXB_STRR6 MUTL_BACSU MUTL_RICPR MLH1_HUMAN MLH1_YEAST MUTL_CHLPN MUTL_CHLTR MUTL_ECOLI MUTL_HAEIN MUTL_SYNY3 MUTL_TREPA MUTL_THEAQ . ... Protein Sci 13(2): 443-56. ...

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• Task 6: additional exercises
• GeneBee service result

... Mathematical models and methods in VLSI design . ... General models and statements about the complexity of combinatorial tasks, methods for development of fast algorithms (method of dynamic programming, ?divide and conquer?, ?method of model extension?) are considered. ... Mathematical models of contemporary electronic circuits are considered and basic approaches to solving task of logic synthesis, as well as tasks of VLSI modules placement and interconnection routing are described. ...

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• Additional Education | Магистерское и послевузовское образование
• Mathematical Models of Complex Systems: Theory, Algorithms, Applications |
• Master program "Mathematical and computer methods of image processing" |

Ca2+, Mg2+, Cl­, SO42­, HCO3­, Na+) ( ). The article presents experimental results that enabled to develop an algorithm of prognostic techniques software to predict chemical composition of product water permeated through OPMN nanofiltration membranes (produced by Vladipor, Vladimir). ... Keywords: nanofiltration membranes, product water quality prognosis, product water composition, optimization of product water ionic composition, surface charge, rejection, recovery. ... NaCl 2+, SO42­ 3­. ...

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• Moscow University Chemistry Bulletin Vol. 49, No. 6, P. 395 (2008)
• Moscow University Chemistry Bulletin Vol. 44, No. 4, P. 224 (2003)
• Moscow University Chemistry Bulletin Vol. 52, No. 2, P. 154 (2011)

Электронная библиотека . ... Главная Ex Libris Книги Журналы Статьи Серии Каталог Wanted Загрузка ХудЛит Справка Поиск по индексам Поиск . ... Поиск по указателям . Результат поиска . Книга . Страницы для поиска . ... Theory, Methods and Applications. ... Hayek S.I. - Advanced mathematical methods in science and engineering . ... see "Undetermined coefficients, method of" . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::
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• Dual J. - Experimental Methods in Wave Propagation in Solids and Dynamic

THE PARAMETERS INVOLVED IN HAPKE'S MODEL FOR ESTIMATION OF THE COMPOSITION OF THE EJECTA LUNAR TERRAINS. ... In the previous papers we were estimated the surface roughness of the ejecta lunar terrains by means comparison of the local phase function and the average integrated lunar indicatrix. ... The Hapke's theoretical model of the lunar surface reflection. ... For THE PARAMETERS INVOLVED IN HAPKE'S MODEL: S.G. Pugacheva, V.V. Shevchenko a low-albedo lunar surface parameter Bo = 1. ...

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• http://selena.sai.msu.ru/Pug/Publications/m44_70_pugacheva.pdf