... Improvement of Java type compiler using in language independent remote process calls in KBase project. 09/2011 ­ present: Moscow State University, Dept. of Bioengineering and Bioinformatics (Russia) Scientific Research Java developer and lecturer Enhanced the CAMPS web resource (http://webclu.bio.wzw.tum.de/CAMPS2.0/) that enables multiple classification of transmembrane proteins. ... Developed web based UI for visualization of a graph of transmembrane protein families. ... Sutormin RA, Mironov AA. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite
• RNA Alignment

... In recent years among methods for analysis of a genomic data, more interest is attracted to alignment-free methods for comparing samples based on work with k-mers (oligonucleotides of length k, also called l-tuples or n-grams) directly from metagenomic reads. ... 2012) A metagenome-wide association study of gut microbiota in type 2 diabetes, Nature, 7418: 55­60. ... 2010) A human gut microbial gene catalogue established by metagenomic sequencing, Nature, 7285: 59-65. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/116.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/35.pdf

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• SVETKA, a program for multiple sequence alignments analysis

Электронная библиотека Попечительского совета . ... Carey K., Blatnik S. - Design Concepts with Code: A Developer Approach . ... Название: Design Concepts with Code: A Developer Approach . Авторы: Carey K., Blatnik S. Аннотация: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::
• Wills D. - Pro Visual C++ 2005 for C# Developers :: Электронная библиотека
• Pevzner P.A. - Computational Molecular Biology An Algorithmic Approach ::

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• SDP home page
• About this project
• SDPpred

... Problems and tasks of the research programme< . ... Laboratory-chair of modelling the natural references of time . ... To indicate the natural references of time and to discuss the consequences of their existence is one of the important tasks of the research programme suggested. ... The equations of motion, representing the basic content of a dynamical theory, are actually a description of the variability objects of interest for the researcher as compared with reference variability (the clocks). ...

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GRS . GRS is a graphic tool for retrieval and visualization of genome segments from partially or completely sequenced genomes. To facilitate visual identification of conserved genomic motifs, genes are color-coded according to their presumed functional roles. ... The gene string analysis option of GRS allows the identification of genes that are identically arranged in any pairwise set of genomes. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - Dynamite
• SAL- Computer Graphics, Images Signals - Processing Visualization - Pixies
• SAL- Programming - Tools & Utilities - NetBeans Developers

... allpy.base: Added decency verification function to alignments (closes #98) Currently, the verification function asserts that no two sequences in an alignment have the same identifier. author . ... 3 from allpy import protein . ... 7 sequence_1 = protein . ... 11 alignment = protein . ... 16 # For each sequence, print number of gaps and non-gaps in alignment . ... 20 for column in alignment . ... 25 print " %s : %s gaps, %s non-gaps" % ( row . ... 27 # Print number of gaps in each column . ...

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• allpy: 43b5207a70d7
• allpy: 43b5207a70d7 test/usecase1.py
• allpy: fdc2d3594a3e NEWS

THE POST-SIMPOSIUM EXCURSION ( July 31 - August 7,1998 ) . ... The six-day excursion took the participants from Lanzhou via the western loess hill country to the north-eastern Tibetan Plateau and via the West Quinling Mountains back to Lanzhou. ... This section is 39m thick and contains the loess of the last glacial period as well as a basal complex of flood loam. In the latter, three poorly developed Ah-horizons can be identified. ...

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• SPECIAL ISSUE OF CATENA «RECONSTRUCTION AND CLIMATIC IMPLICATIONS OF PALEOSOLS»

... USER MAILING LIST . ... TAGGING FOR SPAM MAILS . ... spamassassin - extensible email filter used to identify spam . ... Mail :: SpamAssassin Spam detector and markup engine Mail :: SpamAssassin ::ArchiveIterator find and process messages one at a time Mail :: SpamAssassin ::AutoWhitelist auto-whitelist handler for SpamAssassin Mail :: SpamAssassin ::Bayes determine spammishness using a Bayesian classifier Mail :: SpamAssassin ::BayesStore Bayesian Storage Module Mail :: ...

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• CA Seminar, 21 February, 2001
• Structure of LanHEP input file

... Protein Dynamics as Determinant of Function. ... Graph Matching with Dual-Step EM algorithm. IEEE Trans. ... A Graduated Assignment Algorithm for Graph Matching. ... Protein Structure Compaison by Alignment of Distance Matrices. ... Protein Structure: Insights from Graph Theory. ... Global and Local Protein Matching . A novel method for protein comparison based on EM-SVD (Expectation Maximization - Singular Value Decomposition) will be developed both for global and local similarities. ...

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• RNA secondary structure prediction
• OUTPUT
• GeneBee BLAST 2.2.22+ Services Help

... The Laboratory of Programming Technologies was established in 2001. The Laboratory's team consists of collaborators and graduate students of Computer System Automation Department that work under supervision of Professor Igor Mashechkin. ... series of works for research and development of multi-functional cross-programming system. ... Presently the main scientific direction of the Laboratory is research and development of algorithms and methods for creating data mining software. ...

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• Laboratory of Programming Technologies | CMC MSU
• Laboratory of Mathematical Methods of Image Processing
• Laboratory of Mathematical Methods of Image Processing | CMC MSU

... Performance System Analysis . HOPSA - the joint RF/EU project: HOlistic Performance System Analysis . ... The tool of this type is being developed in the Laboratory of Parallel Informational Technologies of Research Computing Center of Lomonosov Moscow State University. ... The HOPSA project (HOListic Performance System Analysis) therefore sets out for the first time for combined application and system tuning developing an integrated diagnostic infrastructure. ... Joint MSU-Intel Center . ...

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... The main problem is increasing the recognition rate of some recognition engines, working in some restricted domains, such as telephone time-table question-answer systems and so on. ... Our algorithms allow user to get recognition variants, which are right sentences in some formal language. ... We suppose that BRE can produce a set of recognition variants in the form of the "complex chain". ... Length of complex chain is the number of vertexes in its graph. ... const*n^2 . ...

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An approach to display the vector graphics using the Internet-browser environment" . N.A. Bogomolov, A.D. Kovalev, and M.N. Sinitsyn . An approach to the Internet-publication of a large amount of numerical information in graphical form is considered. ... PostScript (in Russian) (271KB) . PDF (in Russian) (129KB) . PostScript. zip (in Russian) (45,9йB) . ... N.A. Bogomolov, A.D. Kovalev, and M.N. Sinitsyn e-mail: nbogom@srcc.msu.ru , kovalev@srcc.msu.ru ...

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• "The inverse problem of wave diagnostics of pavement"
• "Development and implementation of numerical algorithms for solving the
• "Implementation of vectorized finite-difference algorithms for solving boundary

... Method of recursive sequences in associated liquids theory . ... In case of chain association the comparison of RS-method with earlier developed matrix technique is performed. ... Moscow University Chemistry Bulletin . 2011, Vol. ... 3, P. 175 . Copyright (C) Chemistry Dept., Moscow State University, 2002 . ... Copyright (C) Chemisty Department of Moscow State University . ... Web-design: Copyright (C) MIG and VVM . ...

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• Conjunction of thermal lens spectrometry and high-performance liquid
• Moscow University Chemistry Bulletin Vol. 48, No. 1, P. 38 (2007)
• Moscow University Chemistry Bulletin Vol. 54, No. 3, P. 135 (2013)

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• Video Frame Rate N-Times Up-Conversion | Graphics and Media Lab
• Video Frame Rate N-Times Up-Conversion | Лаборатория компьютерной графики и
• x264 codec improvement | Лаборатория компьютерной графики и мультимедиа

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... Unless in many other approaches to the analysis of different signal coupling, the information entering the analysis of synchronization in our approach is explicitly represented in the form of elementary, instantaneous events (the change-points). ... Hence the use of correlation/coherency estimates in parallel with change-point analysis seems to be quite rational. ...

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• Nonparametric approaches to the description of EEG piecewise stationary
• Analysis of change-point synchronization in multi-channel EEG

... Форумы > Разное > Тема . Автор темы annperova . ... Junior Quant Developer . ... Basis Capital, an innovative quantitative trading firm is looking for two junior quant developers and one software developer to join its R&D centre located in Moscow. This is an excellent opportunity to join an experienced team in Moscow and get unique exposure to the global financial markets and quantitative trading. ... Strong interest for the career of quantitative developer and passion for financial markets . ...

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• MMOnline | Форумы | Разное | Software Developer
• MMOnline | Форумы | Аспирантура | Аспирантура в Порту, Португалия
• MMOnline | Форумы | Аспирантура | Аспирантура в Англии по машинному обучению