. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• About this project
• About COGs
• ETS numeration assumed

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• Example of alignment
• SVETKA, a program for multiple sequence alignments analysis

... Recommended values . Start word length . Start length of motiff for Multiple sequence alignment. ... Max N Mismatches . ... Min score . ... Gap parameter . This parameter defines gap scoring. the grater this value is the stronger gap will be panalysed . ... If inforation content of a column is less than given value the column should be not included into alignment. the grater this value is the stronger gap will be panalysed . ... Max loop . Max energy of a helix . ... cgcatagctc cacca . ...

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• SDPsite - Algorithm Format requirements
• RNA Alignment
• SDPsite

NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/28.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Nhunt
• Nhunt: program for nucleic acid sequence similarity search

... The main problem is increasing the recognition rate of some recognition engines, working in some restricted domains, such as telephone time-table question-answer systems and so on. ... Our algorithms allow user to get recognition variants, which are right sentences in some formal language. ... We suppose that BRE can produce a set of recognition variants in the form of the "complex chain". ... Length of complex chain is the number of vertexes in its graph. ... const*n^2 . ...

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... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• Conservative Amino Acid Residues

... About lab . ... Online Journal "Computer graphics and multimedia" (in russian) . ... MSU Graphics & Media Lab (Video Group) . Algorithm performs detection and tracking of foreground objects. Each frame of video sequence is subdivided into regions of two types: foreground and background objects. ... The main obstacle for segmentation here is the abundance of highly textured objects and sophisticated character of motion (bus is moving behind the static fence). ... video@graphics.cs.msu.ru . ...

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• Removing of blocking effect from video | Graphics and Media Lab
• Video Frame Rate N-Times Up-Conversion | Graphics and Media Lab
• Video Frame Rate Double Up-Conversion | Graphics and Media Lab

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Mejlbro L. - Calculus 3c-1 - Examples of Sequences :: Электронная библиотека
• Walker G.A. - Common Statistical Methods for Clinical Research: with SAS

Sternberg Astronomical Institute, Moscow University, . Moscow, Russia . Supernovae make us brighter .. Search russian astronomical resources . Mirror of International Supernovae Network ( Original site ) . Catalogue of Supernovae Stars . HTTP access to SAI Catalogue of Supernovae Stars . SAI SN Light Curves Online . ... Sternberg Astronomical Institute ( in Russian ) . ... Astronet - Russian Astronomical Network . ... Russian Foundation for Basic Research . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Artificial Intelligence - gpc++

... Bioinformatics Portal . GeneBee . ... Bioinformatics Portal of A.N.Belozersky Institute, . Moscow State University . Supported by the Russian Foundation for Basic Research, grant 13-07-00969-a . Original Services of GeneBee Group . Databanks screening . Sequence analysis . Screening by keywords . AliBee Multiple alignment Release 3.0 . AliGraf Graphical Alignment . AliComp Alignments Comparison . Screening by similarity Release 3.0 . ...

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• Multiple alignment
• GeneBee Services
• RNA secondary structure prediction

... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 136 def sequences_chains ( self ): . ...

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• allpy: 208ec59bad5b lib/project.py
• allpy: ef6692b5ffbc lib/project.py
• allpy: 505ce122068b lib/project.py

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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• Change-points in EEG components with different pattern
• Лаборатория нейрофизиологии и нейро-компьютерных интерфейсов (бывш. Группа
• Nonparametric approaches to the description of EEG piecewise stationary

... Improvement of Java type compiler using in language independent remote process calls in KBase project. 09/2011 ­ present: Moscow State University, Dept. of Bioengineering and Bioinformatics (Russia) Scientific Research Java developer and lecturer Enhanced the CAMPS web resource (http://webclu.bio.wzw.tum.de/CAMPS2.0/) that enables multiple classification of transmembrane proteins. ... Developed web based UI for visualization of a graph of transmembrane protein families. ... Sutormin RA, Mironov AA. ...

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• http://storage.bioinf.fbb.msu.ru/~mazin/laci.fasta
• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2014.pdf
• http://storage.bioinf.fbb.msu.ru/~roman/mol_biol_mosk_2006.pdf

... Software . Laboratory of Mathematical Methods of Image Processing . ... Available options: -sigma - (mandatory) set blur parameter for the input image , range: 1.0 to 20.0 - power - set warping power , range: 0.0 to 5.0, default value is 1.0 -1d - apply one-dimensional algorithm (faster but lower quality) basicedges - detect basic edges - edges good for artifact analysis -scale - set scale parameter, range: 1.0 to 20.0, default value is 4.0 gaussblur - blur input ... warp.png . ...

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• Research | Laboratory of Mathematical Methods of Image Processing
• View publication | Laboratory of Mathematical Methods of Image Processing
• Ringing analysis | Laboratory of Mathematical Methods of Image Processing

... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

... Give an example of chemical reaction between a salt and an acid leading to the formation of another salt and a base. (1 point) [Solution] . ... Write the reactions of chromium (III) bromide with hydrogen peroxide in acidic and basic media. (2 points) [Solution] . ... In the reactions, specify the structures of all substances. (3 points) [Solution] . ... Three substances A, B, and C were mixed in the amount of three moles each. ... Example problems in chemistry for the entrance exams ( main round ) ....

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• Entrance Examinations - Main Round
• Спецкурсы кафедры "Химическая энзимология. Основы биоинформатики и

... С целью объединения усилий подразделений МГУ по проведению научных исследований, подготовки и переподготовки кадров в области наук о наносистемах, наноматериалах и нанотехнологии и для обеспечения истинной междисциплинарности образования по этим направлениям в 2008 г. в МГУ имени М.В.Ломоносова был создан Научно-образовательный Центр по нанотехнологиям (НОЦ). ... Семинар по физике конденсированного состояния 28 мая 2014 года . ... Семинар по физике конденсированного состояния 19 марта 2014 года . ...

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• MSU Nanotechnology Education and Research Center | MSU Nanotechnology Education

О лаборатории . ... Лаборатория теоретической биофизики . ... Posted by Peter Mamonov in Без рубрики . ... ab initio basis sets cp2k education Firefly FRAP GAMESS gromacs MDAnalysis membrane mmb nano OPLS pymol python scipy sparse matrix toolset topology познавательно учебные материалы . OPLS-AA patch for different types of molecules . ... All-atom automatic OPLS-AA topology generator . ... OPLS-AA? in All-atom automatic OPLS-AA topology? ... 2011 ERG Research Group . ...

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• Gaussian Cube files loader ERG Research Group: Лаборатория теоретической
• Visualize partial charges in PyMol ERG Research Group: Лаборатория
• Using spherical functions (from A.Granovsky manual) ERG Research Group:

Options can be grouped together: ls -FI . ... Directories are shown with a trailing '/'; files which have execute permission are shown with a trailing '*'. ... Some options need to be given separately: lpr -Plp2 -#4rm report.ps . This prints four copies of the file report.ps , removes the file and sends mail to the user on completion. The option -Plp2 which specifies the printer to be used is given separately from the other options. If the command were given as lpr -Plp2#4rm report.ps . ...

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• Printing multiple copies
• Removing multiple occurrences of a line
• Joint Academic NETwork