... annotate . ... Changed the way related types are stored for Alignment, Block, Sequence, Monomer Now each of them has attribute 'type', which is an object with four attributes: - Alignment - Block - Sequence - Monomer . ... 1 import base . ... me@280 . ... dendik@382 . 4 import dna . ... 6 class Monomer ( base . Monomer ): . ... 7 """DNA monomers: nucleotides.""" . ... 8 type = 'dna' . ... 9 types = dna . ... dna ) . ... 18 class Alignment ( base . ... 21 class Block ( Alignment , base . ...

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• allpy: allpy/rna.py annotate
• allpy: test/test.py annotate
• allpy: allpy/util.py annotate

... annotate . ... Automated merge with ssh://kodomo/petri_dish . ... Smirnova@1 . ... 2 def __init__ ( self , num , bacteria , radius , delta , bact_r , full_lifetime ): . ... 3 self . ... bacteria = bacteria . ... delta = delta . ... bact_r = bact_r . ... 10 def step ( self , delta_t , env ): . ... 11 for bact in self . bacteria : . ... 12 bact . lifetime -= delta_t . ... bacteria , delta_t , self . ... delta , self . bact_r , self . ... collision ( collide , delta_t , self . ...

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• petri_dish: scale.py annotate
• petri_dish: Bacteria.py annotate
• petri_dish: tk1.py annotate

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• Geometrical core

A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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• Genebee Predicted Annotation
• Genebee Predicted Annotation - Advanced

. Name . Last Modified . Size . Type . Parent Directory / . - . Directory . Algorithm-Annotate-0.100.0-r1.ebuild . 2015-Aug-09 03:38:18 . 0.4K . text/plain . ChangeLog . 2016-Jan-25 18:35:37 . 2.4K . application/octet-stream . ChangeLog-2015 . 2015-Nov-09 07:11:44 . 2.8K . application/octet-stream . Manifest . 2016-Jan-25 18:35:37 . 1.8K . application/octet-stream . metadata.xml . 2016-Jan-25 02:06:09 . 0.4K . text/xml . lighttpd/1.4.35

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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• About this project
• Inquiry information || Parsimony algorithm
• SDPpred

Электронная библиотека Попечительского совета . ... van der Vlist E. - Relax NG . ... Название: Relax NG . Автор: van der Vlist E. Аннотация: . ... Over the past few years, an alternative has emerged, combining the ease of DTDs with the power of W3C XML Schema: RELAX NG. ... While working with RELAX NG is easy compared to W3C XML Schema, there is still plenty to learn. ... ambiguity, RELAX NG . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Abrams B., Abrams T. - .NET Framework Standard Library Annotated Reference
• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::
• Niemeyer P., Knudsen J. - Learning Java :: Электронная библиотека

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• SDPlight
• SDPsite - Algorithm Format requirements
• Algorithm

... Cell border width (pixels). unspecified . ... Column to sort initially ( "1" to number of columns). unspecified . ... Data cell alignment, one value for all columns, or a comma separated list for different alignment of individual columns. ... Data cell background colour of a sorted column; see databg . ... Data cell text colour, a comma separated list. unspecified . ... Header cell alignment, one value for all columns, or a comma separated list for different alignment of individual columns. ...

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• VarTABLE - TWiki - TWiki - (printable)
• %TOPICTITLE% ( vs. 1) - TWiki

... О UNИX . ... HelpOnTables . ... Table Markup . ... General table layout and HTML like options . ... Line breaks within cells . ... Bulleted lists and other complex content within cells To create a table, start & end a new line using the table marker; two 'pipe' characters " || ... top left cell || top right cell || || bottom left cell || bottom right cell || ... Just use CSS-formatted styles and it will be inlined in the generated HTML tag. <style="..."> will put that style info into cell (td) html ...

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... О UNИX . ... HelpOnTables . ... Table Markup . ... General table layout and HTML like options . ... Line breaks within cells . ... Bulleted lists and other complex content within cells To create a table, start & end a new line using the table marker; two 'pipe' characters " || ... top left cell || top right cell || || bottom left cell || bottom right cell || ... Just use CSS-formatted styles and it will be inlined in the generated HTML tag. <style="..."> will put that style info into cell (td) html ...

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. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• ConClus
• Nhunt: program for nucleic acid sequence similarity search

... Second, alignment of highly similar genomic sequences is useful for comparison of genome assemblies of the same organism or closely related ones. ... Nucleotide pangenome (NPG) of an input set of genomes is a set of aligned blocks, each block composed of orthologous fragments. ... Hemi-stable blocks (h-blocks) include no more than one fragment of a genome and lack a fragment of at least one of genomes. ... Blocks with repeats (r-blocks) include more than one fragment from one or several genomes. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/126.pdf

... Is only visible when cellspacing is larger than 1, or cellborder is 0 , or tablerules is none , otherwise the cell borders overlap the table border. unspecified . ... Table rules, set to "none" (no rules), "groups" (rules will appear between row groups and column groups only), "rows" (rules will appear between rows only), "cols" (rules will appear between columns only), "all" (rules will appear between all rows and columns). ... unspecified . ... This topic: System > Plugins > TablePlugin > VarTABLE...

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... Content Model: Table Cells (TH or TD) . The TR element acts as a container for a row of table cells defined with the TH or TD elements. ... You also have the ability to disable word wrap for the row, and thereafter use the <BR> element to determine line breaks and hence cell widths. ... The recommended approach is to subclass rows using the CLASS attribute For example: <TABLE BORDER COLSPEC= .. ... ALIGN . ... This is used when you want to ensure that all cells in the row share the same baseline. ...

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• Paragraphs
• Horizontal Tabs
• HTML Math

... Improvement of Java type compiler using in language independent remote process calls in KBase project. 09/2011 ­ present: Moscow State University, Dept. of Bioengineering and Bioinformatics (Russia) Scientific Research Java developer and lecturer Enhanced the CAMPS web resource (http://webclu.bio.wzw.tum.de/CAMPS2.0/) that enables multiple classification of transmembrane proteins. ... Developed web based UI for visualization of a graph of transmembrane protein families. ... Sutormin RA, Mironov AA. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2014.pdf
• http://storage.bioinf.fbb.msu.ru/~mazin/laci.fasta

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• APOD: September 11, 1999 - The Annotated Galactic Center
• APOD: November 30, 1998 - An Annotated Leonid
• APOD: 2010 August 31 - The Annotated Galactic Center

... Next . 3.0.12 - 3.0.18 only, PHP 4 >= 4.0.0) cpdf_add_annotation -- Adds annotation . void cpdf_add_annotation ( int pdf document, float llx, float lly, float urx, float ury, string title, string content [, int mode]) . The cpdf_add_annotation() adds a note with the lower left corner at ( llx , lly ) and the upper right corner at ( urx , ury ). The optional parameter mode determines the unit length. If it's 0 or omitted the default unit as specified for the page is used. ...

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• Java Distributed Computing course annotation
• pdf_add_annotation
• hw_InsertObject

Astronomy Picture of the Day . ... 11.11.1997 . ... Constellations of nearby stars include Sagittarius , Libra , Scorpius , Scutum , and Ophiuchus . ... Open clusters include M6 , M7 , M18 , M21 , M23 , M24 , M25 . Globular clusters include M9 , M22 , M28 , M54 , M69 , M70 . ... November 1997 . ... NASA Web Site Statements, Warnings, and Disclaimers . ... Publications with keywords: Galactic Center . Publications with words: Galactic Center . ... Sgr A*: Fast Stars Near the Galactic Center . ...

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• Астронет > The Annotated Galactic Center

previous next contents elements attributes index . ... Alignment . ... Font style elements: the TT , I , B , BIG , SMALL , STRIKE , S , and U elements . ... This attribute specifies the horizontal alignment of its element with respect to the surrounding context. ... You could reduce the scope of the style by setting the class attribute on the element: <HEAD> <TITLE>How to Carve Wood</TITLE> <STYLE type="text/css"> H1.wood {text-align: center} </STYLE> <BODY> <H1 class="wood"> How to Carve Wood </H1> . ...

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• Index
• HTML 4.0 Specification
• Language information and text direction