Nucleotide BLAST . ... These searches translate either query sequences or databases from nucleotides to proteins so that protein - nucleotide sequences can be performed. ... Takes a protein query sequence and compares it against an NCBI nucleotide database which has been translated in all six reading frames. ... Converts a nucleotide query sequence into protein sequences in all 6 reading frames and then compares this to an NCBI nucleotide database which has been translated in all six reading frames. ...

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FASTA /TFASTA/FASTX/TFASTXv3(1) FASTA /TFASTA/FASTX/TFASTXv3(1) NAME fasta3, fasta3_t - scan a protein or DNA sequence library for similar sequences tfasta3, tfasta3_t - compare a protein sequence to a DNA sequence library , translating the DNA sequence library `on-the-fly'. fastx3, fastx3_t - compare a DNA sequence to a protein sequence ... REF_URL the format string used to define the option to lookup the library sequence in entrez, or some other database. ...

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• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/index.html
• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/blastall.html
• http://kodomo.cmm.msu.su/FBB/year_04/doc/BLAST_help/rpsblast.html

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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... Levitskaya O., Glazko V.I. Centre of experimental embryology and reproductive biotechnology Russian Academy of Agricultural Sciences e-mail: sotnikova.evgeniya@gmail.com For a comparative analysis of the prevalence of nucleotide substitutions in different genes of the proviral DNA of bovine leukemia virus in our studies performed comparing the frequency nucleotide substitutions and nonsynonymous to synonymous substitutions ratio (Kn/s) in the coding sequences of genes env and pol. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/222.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/136.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf

Электронная библиотека Попечительского совета . ... Forta B. - MySQL Crash Course . ... Название: MySQL Crash Course . Автор: Forta B. Аннотация: . ... By working through 30 highly focused hands-on lessons, your MySQL Crash Course will be both easier and more effective than you'd have thought possible. ... Administrator (MySQL) [See MySQL Administrator] [See MySQL Administrator] . advantages of (MySQL) . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Bishop M.J. - Genetic Databases (Biological Techniques Series) :: Электронная
• Fehily C. - SQL (Visual QuickStart Guide) :: Электронная библиотека
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... INSERT operations into very simple tables with few columns and keys. ... Tables with variable-length strings, since MySQL has more efficent handling and can have indexes on VARCHAR columns. ... We know that mSQL has a JDBC driver, but we have too little experience with it to compare. ... To get some perspective on this, you can view the mSQL `HISTORY' file for the last year and compare it with the News section of the MySQL Reference Manual (see section D MySQL change history ). ... Column types . ...

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• The paths database
• mod_charset_lite - Apache HTTP Server

... Protein sequences . ... European ribosomal RNA database . ... Thermodynamic database for protein-nucleic acids interactions (Japan) . ... Families of structurally similar proteins . ... Database of protein families and HMMs (collection of multiple sequence alignments and hidden Markov models) . ... Collection of protein families constructed by clustering complete protein sequences. ... Database issues of NAR: vol. 31 (2003) , vol. 32 (2004) , vol. 33 (2005) , vol. 34 (2006) , vol. 35 (2007) , vol. ...

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• About COGs
• SVETKA, a program for multiple sequence alignments analysus
• ETS sequence conservation

... We are recursive, because we also want to fill the fileid cache. Parameters: fileid -- fileid whose path is to be determined. path_list -- existing path components. Ought to be the empty list for the first invocation. if fileid in self . fileid _cache: return self . fileid _cache[ fileid ] debug ( Working with fileid '%s' % ( fileid )) self .dbc.execute( select name , parent_ fileid from + metadata_tbl + where fileid = %s , ( fileid )) result = c.fetchone() if ...

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• History and personal contributions

Integration of Fuzzy c-Means Clustering algorithm with PostgreSQL database management system" . Miniakhmetov R.M., Tsymbler M.L. The integration of data mining algorithms with relational database management systems (DBMS) is a topical issue. ... This paper suggests an implementation of Fuzzy c-Means Clustering algorithm for the PostgreSQL open-source DBMS. ... Keywords: fuzzy clustering, integration clustering algorithms with relational DBMS . PostScript (in Russian) (787KB) . ...

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• "A hybrid database (information system) on the molecular spectral constants"
• "Data structuring and formalization in the hybrid database on molecular
• "Identification algorithms for substances in the hybrid database on molecular

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... LDAP is the Lightweight Directory Access Protocol, and is a protocol used to access "Directory Servers". ... Search surname entry $sr= ldap _ search ($ds, o=My Company, c=US , sn=S* ); echo Search result is .$sr. p ; echo Number of entires returned is . ldap _count_ entries ($ds,$sr). p ; echo Getting entries ... p ; $info = ldap _ get _ entries ($ds, $sr); ... ldap_get_attributes -- Get attributes from a search result entry . ... ldap_get_entries -- Get all result entries...