Molecular
Biology Databases
Sequences
3-dimensional structures and derived information
Homology families, multiple alignments
ProSite |
Functional protein sites |
Pfam |
Database of protein families and HMMs (collection of multiple sequence alignments and
hidden Markov models) |
Rfam |
Database of RNA families and HMMs (collection of multiple sequence alignments and
hidden Markov models) |
PRINTS |
Protein fingerprint database |
BLOCKS |
Multiply aligned ungapped segments of proteins represented in the Prosite databank |
COGs |
Clusters of orthologous groups of proteins |
PRODOM
| Collection of protein families constructed by clustering complete protein sequences. |
Genes and genomes
OMIM |
Online Mendelian Inheritance in Man: catalog of human genes and genetic disorders |
Ensembl |
Genome Browser (complete animal genomes) |
dbSNP |
Database of Single Nucleotide Polymorphisms |
ICTVdB |
A Universal Virus Database |
HERVd |
Human endogenous retrovirus database |
Other
Database issues of NAR:
vol. 31 (2003),
vol. 32 (2004),
vol. 33 (2005),
vol. 34 (2006),
vol. 35 (2007),
vol. 36 (2008).
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