Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=4 inherit toolchain-funcs DESCRIPTION = Global and progressive multiple sequence alignment HOMEPAGE= http://msa.cgb.ki.se/ SRC_URI= mirror:// debian /pool/main/k/kalign/${PN}_${PV}.orig.tar.gz LICENSE = GPL-2 SLOT= 0 IUSE= KEYWORDS= ...

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... add test.py multiple pdb per one chain ability added fix: tabs -> spaces fix: get_from_fasta -> from_fasta sequence.pdb_chain_add -- to be done . ... 12 import allpy_data . ... 14 class Project ( object ): . ... 31 Project(sequences, alignment) -> new Project with sequences and . ... 33 Project(fasta_file) -> new Project, read alignment and sequences . ... 38 self . ... 97 >>> sequences,alignment=project.Project.from_fasta(open("test.fasta")) . ... 133 alignment [ sequences [ - 1 ]] = alignment_list...

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• allpy: ceea02544d83 lib/project.py
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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• mod_dav - Apache HTTP Server
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... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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... Множественное выравнивание последовательностей. ... Ознакомление с программой Muscle. ... Выполнив команду: wossname alignment я посмотрела список программ EMDOSS, так или иначе связанных с выравниваниями: aligncopy Reads and writes alignments aligncopypair Reads and writes pairs from alignments consambig Create an ambiguous consensus sequence from a multiple alignment diffseq Compare and report features of two similar sequences distmat Create a distance matrix from a multiple ...

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Upload Information Template for Hobbes.nmsu.edu =============================================== Archive Filename: major1.67.zip Short Description: A mailing list processor for OS/2 Long Description: Major Major allows you to set up multiple mailing lists, where incoming mail is distributed to the list members. Moderated lists are also supported. ...

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Электронная библиотека Попечительского совета . ... Narkiewicz W. - Uniform Distribution Of Sequences Of Integers In Residue Classes . ... Название: Uniform Distribution Of Sequences Of Integers In Residue Classes . Автор: Narkiewicz W. Язык: . ... Sequence uniformly distributed mod N 1 . Sequence weakly uniformly distributed mod N 8 . ... Uniform distribution mod N 1 . Uniform distribution mod N, criterion 1 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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... Russian Pages . CDFE: Home Page . ... Numerical data, graphics, and bibliography . ... description] . Last updated: May 6th, 2014 . ... Last updated: June 15th, 2011 . ... Last updated: . ... Last updated: April 4th, 2015 . ... Last updated: February 25th, 2016 . ... Last updated: September 27th, 2011 . ... Photonuclear Data Index since 1955 . ... Last updated: September 15th, 2015 . ... Last updated: March 22th, 2010 . ... Last updated: March 19th, 2015 . ... Last updated: May 15th, 2002 . ...

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• Wave function of helium-like ions

О лаборатории . ... Лаборатория теоретической биофизики . ... On this page we collect references to our resources, documentation and resources on other sites. All these data are very helpful for everybody who wants to learn practical quantum chemistry. Firefly (PC GAMESS) main page . ... ERG group wrote some articles about visualization: . ... Нет комментариев " Quantum chemistry information page " . ... Quantum chemistry information page . ... 2015 ERG Research Group . ...

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Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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... Abstract Description of the whole sorption preconcentration step was proposed based on a system of equations comprising equations of mass balance, external diffusion mass transfer and equilibrium distribution of analyte. ... Moscow University Chemistry Bulletin . 2009, Vol. ... 4, P. 238 . Copyright (C) Chemistry Dept., Moscow State University, 2002 . ... Copyright (C) Chemisty Department of Moscow State University . ... Web-design: Copyright (C) MIG and VVM . ...

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DESCRIPTION OF THE 3d SOLAR EVENT MAP . ... This date coincides with central day of the map marked by solid vertical line (in the present example - 13 July, 2000). ... The following phenomena are presented on the map: coronal holes, filaments, solar flares and the distribution of the solar magnetic field on the source surface (2.5 solar radii). The coronal holes are drawn by irregular solid curves with colors according to the day of observation (light blue, orange and violet). ...

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. The command man gives you access to an on-line manual containing a complete description of every command available on this system. man can also provide you with one line descriptions of commands specified by name; or for all commands whose description contains any of a set of keywords. Understanding the organisation of the manual . Searching by keyword . Checking the description of a command . Viewing manual pages . Printing manual pages .

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... E. Huhlaev, Metamake Tools for Personal Project Preparation in Heterogeneous Network Environment (ID=260), Word doc . ... O. Kodolova, Experience with OO Database for CMS Events Distributed Between Two Sites (ID=294), PDF file . ... A. Nikitin, The GA Based Approach to Optimization of Parallel Calculations in Large Physics Problems (ID=220), Word doc . ... J. Seixas, Neural Particle Discrimination for Triggering Interesting Physics Channels Using Calorimetry Data (ID=311), PDF file . ...

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... Parent Directory - _vti_cnf/ 24-Oct-2012 02:50 - filelist.xml 08-Dec-2003 16:18 476 image001.gif 08-Dec-2003 16:18 5.3K image002.wmz 08-Dec-2003 16:18 427 image003.gif 08-Dec-2003 16:18 393 image004.wmz 08-Dec-2003 16:18 469 image005.gif 08-Dec-2003 16:18 537 image006.wmz 08-Dec-2003 16:18 374 image007.gif 08-Dec-2003 16:18 245 image008.wmz 08-Dec-2003 16:18 454 image009.gif 08-Dec-2003 16:18 521 image010.wmz 08-Dec-2003 16:18 391 image011.gif 08-Dec-2003 16:18 338 . ...

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• Index of /rus/edu/kvant/II_2/STAT2/_private/distribution.files/_vti_cnf
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... X-COM: Distributed Computing Software . ... The idea of distributed computing, or metacomputing, is to combine available computational resources for different applications processing. ... For these applications we simultaneously used high-performance computational resources of Moscow State University and Russian Academy of Sciences, computing centers of Saint Petersburg, Novosibirsk, Chelyabinsk, Ufa, Tomsk, etc. ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• Distributed Modular Monitoring System: a New Approach to Supercomputer

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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extra:main ]] . CompHEP . ... Script for including cuts, kinematics, or regularizations into batch.dat file . Script for CompHep cross-sections energy dependence calculation . ... When you done CompHep calculations for the process under study at one energy, you may easely get cross-sections energy dependence running script cs_energy_dep.pl . ... For every energy point the script modifies results/batch.dat file and runs CompHep script num_batch.pl to calculate given process cross-sections. ...

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• extra:model:main [CompHEP]
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