... Columns represented with one sequence or pure gap columns are not considered. Calculate weighted average of number of connected components in columns. Weight of column = l / sum(l) (l = number of sequnces representing column) . ... 9 # Create alignment from sequences . ... 15 # For each sequence, print number of gaps and non-gaps in alignment . ... 19 for column in alignment . ... 26 # Print number of gaps in each column . ... 29 column_gaps = 0 . ... 31 if sequence not in column : . ...

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• allpy: ee2c10aa74b8 test/usecase2.py
• allpy: ee2c10aa74b8 test/usecase3.py
• allpy: a3df15a42f9d test/usecase2.py

... The aim of this work is the most detailed investigation of the morphological variability of Nymphaea alba s.l. in the European Russia on the fresh material. ... The investigation of exine sculpture by light microscope (referred hereafter as LM) doesn’t let us clearly attribute the majority of examined pollen grains to one of the types, that are traditionally distinguished in Nymphaea genus by systematics and palinologists (Komarov, 1937; Kupriyanova, 1976; Dubyhna, 1982; Uotilla, 2001). ...

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• New Page 1

... SDPpred is a tool for prediction of residues in protein sequences that determine functional differences between proteins, having same general biochemical function. ... Amino acid residues that determine differences in protein functional specificity and account for correct recognition of interaction partners, are usually thought to correspond to those positions of a protein multiple alignment, where the distribution of amino acids is closely associated with grouping of proteins by specificity. ...

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• SDPlight
• SDPsite - Algorithm Format requirements
• RNA Alignment

... The Difference Frequency Doppler Tomography of Bubble Streams . I.Didenkulov (Institute of Applied Physics RAS, Nizhny Novgorod, Russia); L.M.Kustov, A.I.Martyanov, N.V.Pronchatov-Rubtsov (Nizhny Novgorod State University, Nizhny Novgorod, Russia); S.W.Yoon (Sung Kyun Kwan University, Suwon, Republic of Korea) . ... It is based on measurement of Doppler frequency spectrum of the difference frequency acoustic wave scattered from the bubble stream and it comparison with the model spectrum. ...

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Электронная библиотека Попечительского совета . ... Becker G.F. - On the Earth Considered as a Heat Engine . ... Название: On the Earth Considered as a Heat Engine . Автор: Becker G.F. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Caforio G., Kummel G. - Military Missions and Their Implications Reconsidered:
• Zhang B. G., Yong Z. - Qualitative analysis of delay partial difference
• Drmac Z. (ed.), Tutek Z. (ed.), Marusic M. (ed.) - Proceedings of the

Image enhancement quality metrics Andrey Nasonov, Andrey Krylov Laboratory of Mathematics Methods of Image Processing Department of Computational Mathematics and Cybernetics Moscow State University, Moscow, Russia {nasonov, kryl}@cs.msu.ru Abstract The paper presents a new adaptive full reference metrics for the quality measurement of image enhancement algorithms. ... Two types of artifacts are considered: blur and ringing effect. ... BASIC EDGES Blur and ringing effect appears near sharp edges. ...

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• http://imaging.cs.msu.ru/pub/2009.Graphicon.Krylov_Nasonov.IntComb.en.pdf
• Research | Laboratory of Mathematical Methods of Image Processing

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/222.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/245.pdf

The old base model for VES data interpretation was horizontally-layered medium. We consider as the new base model ( fig.1 ) a combination of horizontally-layered structure (HLS) , deep inhomogeneities (DI) (3-4 on fig.1) and nearsurface inhomogeneities - NSI (1-2 on fig.1). TES field technology includes the next rules: . ... In turn AO max depends on depth of investigation h max . ... These effects depends also on the fact: is this dipole group or single electrode moveable or unmoveable. ...

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• Anis. Page2

... З. и. таЕДЦЗ еУТНУ,ТНЛИ ,,УТЫ ТЪ,ВММњИ ЫМЛ,В ТЛЪВЪ ЛП. е.З. гУПУМУТУ, ЗЗЦСЦзаЦ 40 ї тЛћВ, З.и., 1997 , , -, , " " , , . лйкйлйЗлдав йЕкДбйЗДнЦгъзхв ЬмкзДг, <6, 1997 , " " (1996. 11). иказсаих ейгЦдмгькзйЙй дйзлнкмакйЗДзаь Ьд ийгаеЦкйЗ , ( ) , - . ... 1. : - , - ( ) () , ( ), () ( ) таЕДЦЗ З.и. ЬаСдйдкалнДггауЦлдаЦ ийгаеЦкх 41 . ... 0) таЕДЦЗ З.и. ЬаСдйдкалнДггауЦлдаЦ ийгаеЦкх 45 I, % 100 u=0 50 u 0 , , max P (. 3, ). , max = P n ( n - ). P. , max ( 300 104 ), -, - . ...

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• Moscow University Chemistry Bulletin Vol. 46, No. 6, P. 411 (2005)
• Photoacoustic detection of the parameters of laser vaporisation of amorphous
• ANALYTICAL CHEMISTRY DIVISION

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... This section presents the results of the application of the methodology described in the previous section to real EEG signal. ... Fig. 7.1. Detection algorithm adapted for the EEG analysis . The EEG (a) was filtered in the alpha band (bandpass 7.5--12.5 Hz) (b) and then the amplitude squared (c); the result is the sequence from which the subintervals are cut out at further steps. ...

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• Other prospects of the change-point based analysis
• Change-point synchronization between signals or signal components
• Analysis of change-point synchronization in multi-channel EEG

BLASTCLUST - BLAST score-based single-linkage clustering. ... BLASTCLUST automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA. ... The primary input format for BLASTCLUST is a FASTA-format sequence file. ... Another type of input is a sequence hit-list previously saved by BLASTCLUST (in this case BLASTCLUST will use pre-computed HSP data instead of making de novo comparisons). ...

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THE STRUCTURES OF TIME. ... The essence of time is considered in the observing of the present, which is the attribute of united existence. The time is considered as the self-organizing reality, the elements of which are determined as the structures of time. ... 272]. ... B , , , 11-05, , , , 11-10 (, , , 5 ). ... 272­274]. ... 273]. , ? ... 1986. ... 1979. ... 2003. 3. , . ... 2. der Zweifel . ... 1999. ... http://www.chronos.msu.ru/ 7. « , » ­ «» . ... 1996. 10. http://ru.wikipedia.org/wiki 11. ...

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• THE PROBLEMS IN EXPERIMENTAL FOUNDATION OF CAUSAL MECHANICS
• СИММЕТРИЧНЫЕ И АСИММЕТРИЧНЫЕ ВРЕМЕННЫЕ ПРОЦЕССЫ В ЖИВЫХ ОРГАНИЗМАХ
• Russian Interdisciplinary Temporology Seminar

A problem, that can arise when moving from Fortran 77 to Fortran 90, is dependent on a usual deviation from the standard, and has to do especially with user programs. ... With many Fortran 77 implementations we wrote PROGRAM TEST REAL X WRITE(*,10) 10 FORMAT('Give X = ',$) READ(*,*) X WRITE(*,*) X END In Fortran 90 we use "non-advancing I/O" instead. ... In some old Fortran dialects the statement TYPE was used to write on a typewriter terminal and PRINT was used to write on the line printer. ...

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• Long description of example illustrating table row height calculations and
• Alignment, font styles, and horizontal rules in HTML documents
• Fortran 95

... The bathroom can be a place of vanity for some and considered to be the supposed-cleanest part of the property. ... borse hermes outlet , in all of the areas of the house, . borse chanel replica , the bathroom has some of the most challenging areas to clean considering the effort and the dirt you?ll get while cleaning its tub and commode. ... A true fashion lover always follows Gucci, are incredibly trend-setting logo and it is unquestionably breaking new grounds when considering design, . ...

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• editor | С Днем Победы!

... 90-day forecast for X, Y, UT1-UTC. ... 6-year base period (~2190 points).For UT1-UTC and LOD tidal variations in the Earth rotation IERS Convention 2000 model excluded, then included and predictions are performed for differences. Trend of the second order modeled for all, except LOD. ... Autocorrelation function estimated from 6-year base period (~2190 points), last 200 are points used for prediction. For UT1-UTC and LOD predictions are performed for differences. ...

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Analysis of the ANTARES data for SN neutrino detection V. Kulikovskiy (MSU / INFN Genova) SN detection, V.Kulikovskiy, ANTARES meeting in Amsterdam 22-09-2010 1/14 SN progenitor stars distribution A half of the possible sources of SN type II explosion are at 10kpc. Sensitivity decreases as the square of the distance to SN SN detection, V.Kulikovskiy, ANTARES meeting in Amsterdam 22-09-2010 2/14 Methods overview Single rate 1. exclude OMs affected by bio bursts 2. ...

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• http://antares.sinp.msu.ru/seminar/Kulikovskiy.pdf

... name="FileAttachment" . ... Each FileAttachment in a Topic has an attribute string. At present only only the hidden attribute is supported. If the attribute includes h then the attachment is considered to be hidden. It is not listed in the topic, but is displayed when attach page is displayed. ... name="FileAttachment" Each FileAttachment in a Topic has an attribute string. ... If the attribute include h then the attachment is considered to be hidden. ...

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• %TOPICTITLE% (1 vs. 2) - TWiki
• %TOPICTITLE% (3 vs. 4) - TWiki
• TemplateWeb - TWiki - TWiki - (printable)

... DRIVER: Numerical simulation of transitional processes and features of developed turbulent regimes in flows of electrolytic solutions under electric field. ... DRIVER: Develpment of numerical modelling of noise generation processes in turbulent flows (jets, wakes, fans etc.) ... OBJECTIVE: As a result of numerical modelling, aerodynamic (mean parameters profiles, TKE distributions) and aeroacoustic (far field spectra) characteristics should be obtained for turbulent flows considered . ...

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... USE OF A NEW VERSION OF COMAGMAT TO MODEL SULPHIDES IN GABBRONORITIC MELTS AND OL CUMULUS PILES Alexey Ariskin Kirill Bychkov 1 2 2 Leonid Danyushevsky Galina Barmina 1 1. ... CODES, University of Tasmania In an accompanying paper we presented a new version of the COMAGMAT magma crystallization model [1-3] allowing one to model various sulfide-silicate assemblages [2] and the effect of NiO content in the melt on SCSS, silicate minerals and sulphide compositions [3]. ... 4] Ariskin et al. ...

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• http://geo.web.ru/conf/alkaline/2009/Lokhov.htm
• http://geo.web.ru/~ariskin/docs/papers/a_2010_adelaide_bychkov.pdf

... This information is needed for description of interaction of atom and ion with charge particles and photons. ... The project calculations are based on variational method and wave function expansion in a linear combination of hydrogen - like functions with effective charges. wave function of atoms, wave function of ions, cross section calculations, helium-like, variational method, Hartree - Fock, excited states, ionization, single excitation, double ionization, double excitation . ...

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