log . ... Wed, 20 Jul 2011 19:09:31 +0400 . Daniil Alexeyevsky . ... Wed, 14 Dec 2011 21:09:28 +0400 . ... Wed, 14 Dec 2011 19:45:57 +0300 . ... Mon, 28 Nov 2011 18:33:25 +0300 . ... Tue, 22 Nov 2011 00:13:40 +0300 . ... Wed, 09 Nov 2011 00:49:31 +0300 . ... Automated merge with ssh://kodomo/allpy . ... Boris Nagaev . ... Fri, 04 Nov 2011 13:38:28 +0300 . ... Thu, 03 Nov 2011 23:34:03 +0300 . ... Fri, 28 Oct 2011 20:40:55 +0300 . ... Thu, 27 Oct 2011 12:26:19 +0300 . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• ETS_all_contacts alignment
• ETS_3D_conservation
• ETS sequence conservation

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... Timeline . ... View Tickets . ... done by Repository changesets Milestones reached Tickets opened and closed . 21:09 Changeset [11:0ece930a4d1b] by Daniil Alexeyevsky <me.dendik@?> . ... 21:02 Changeset [10:f25c0439251f] by Alex Martynov <martiran@?> . ... fixed: Это я помню, в змее то они будут представлены как список =) Все - ? ... 01:32 Ticket #12 (Идеи на будующее) created by martiran . ... 17:30 Ticket #11 (trac не реагирует на магические коммиты вида closes #id, refs #id) created by dendik . ...

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• Timeline ? Tanchiki

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• S : rm_systems
• Example of alignment
• wLake program homepage

... Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment . ... Название: A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment . Авторы: Lathrop R.H., Rogers Jr R.G., Smith T.F. Аннотация: . A rigorous Bayesian analysis is presented that unifies protein sequence-structure alignment and recognition. ...

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• Daepp U., Gorkin P. - Reading, writing and proving. Close look at mathematics
• Kechris A.S., Louveau A. - Descriptive Set Theory and the Structure of Sets of
• Heggins D., Taylor W. - Bioinformatics: Sequence, Structure and Databanks ::

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• BLAST Basic Overview
• Bioinformatics portal, Moscow State University
• Screening of pattern or alignment against PROTEIN databank

Routing on lattice-cellular structures" . Ryabov G.G. An extension of the class of lattice graphs is considered. In order to become close to the Euclidean metric, inclusion of additional ribs with weights equal to the corresponding lengths of vectors in the Euclidean space is performed in a neighborhood on the lattice. ... An algorithm for constructing a set of the shortest paths on such a lattice is proposed. ... PostScript (in Russian) (6.04MB) . PDF (in Russian) (710KB) . ...

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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Not so well documented Device Helpers in OS/2

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Nhunt: program for nucleic acid sequence similarity search
• Align tool for DNA-protein complexes

... LDAP is the Lightweight Directory Access Protocol, and is a protocol used to access "Directory Servers". ... Search surname entry $sr= ldap _ search ($ds, o=My Company, c=US , sn=S* ); echo Search result is .$sr. p ; echo Number of entires returned is . ldap _count_ entries ($ds,$sr). p ; echo Getting entries ... p ; $info = ldap _ get _ entries ($ds, $sr); ... ldap_get_attributes -- Get attributes from a search result entry . ... ldap_get_entries -- Get all result entries...

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• Alternative syntax for control structures
• udm_close_stored
• ibase_blob_close

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/172.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf

The existence of oceanic islands and seamounts is supposed to be the one of the main evidence of the plate tectonic theory. But there is no such acient geological object which could be so similar to rock complex of oceanic island. These structures must include the alkaline magmatism manifestation, sedimentary rocks close to recent riff limestone on the oceanic islands and sequence of terrigenic rocks. ... 100.00 . ... H 2 O calculated by the 100% norm of cations. d.l.. ...

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.

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• PubMed medline query

... 5DPK structure . Page of complex: 5DPK . Home Browse Download Help About Us . ... PDB ID . ... MUTY ADENINE GLYCOSYLASE BOUND TO A TRANSITION STATE ANALOG (1N) PAIRED WITH D(8-OXOG) IN DUPLEXED DNA TO 2.2 A . ... View in . ... Protein chains: . DNA chains: . ... 5dpk.pdb1.pdb . ... Pfam domains . ... Download file with secondary structure created by Stride . 5dpk.pdb1.pdb: [ download sequences in FASTA format ] . ... Click "SHOW" for view sequence . ... NPIDB team 2003 - 2016 . ...

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• NPIDB: Home

DCSE . DCSE (Dedicated Comparative Sequence Editor) is a multiple alignment editor. ... It offers lots of features such as color display of characters and structure, automatic alignment relative to sequences already aligned with others, sequence grouping, sequence or pattern searching, marker system and checking of incorporated RNA structure. tkDCSE is a version of DCSE for X-Windows. ... Home Site: . ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• APOD: January 4, 1998 - Fractal Interstellar Dust Up Close
• SAL- Scientific Data Processing Visualization - Software Packages - GMV
• SAL- Other Scientific Fields - Chemistry, Biology Related - RnaViz

... The first-order intermolecular perturbation theory developed in the frame of diatomics-in-molecule approach is used to calculate the potential energy surfaces of the Ar.. Cl2 complex in the states which correlate with the X0g+ and B0u+ states of Cl2 fragment. ... Laboratory of Molecular Structure and Quantum Mechanics ...

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• PC Crystal Chemistry Analysis of Organic Crystal Structures
• M. Ya. Melnikov, V.A. Smirnov Handbook of Photochemistry of Organic Radicals
• The Molecular Structure of 2-Chloroacrolein Studied by Gas Electron

Astronomy Picture of the Day . ... Tonight and over the next few days, when Mars is at its closest approach to Earth in nearly 60,000 years, you might get your best view ever of our planetary neighbor. Please, though, don't expect to see this much structure , or expect to see Mars rotate so much in so brief a period. ... In reality, one full Martian rotation -- a Martian day -- is only about 40 minutes longer than an Earth day. ... Publications with keywords: Mars . ... Victoria Crater on Mars . ...

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• Астронет > Earth Webcam Catches Mars Rotation
• Journal "Peremennye Zvezdy"
• The Double Nucleus of M31

Next: SYSTEM CALL: msgget() Up: Internal and User Data Previous: Kernel msqid_ds structure . The kernel stores permission information for IPC objects in a structure of type ipc_perm . ... struct ipc_perm { key_t key; ushort uid; /* owner euid and egid */ ushort gid; ushort cuid; /* creator euid and egid */ ushort cgid; ushort mode; /* access modes see mode flags below */ ushort seq; /* slot usage sequence number */ }; . ... Finally, the slot usage sequence number is stored at the end. ...

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• The Linux Kernel: Table of Contents
• The boot process in closer look

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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• MPI_File_close | PARALLEL.RU - Информационно-аналитический центр по
• Closing a File | PARALLEL.RU - Информационно-аналитический центр по
• Partitioning of Cartesian structures | PARALLEL.RU -