... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 136 def sequences_chains ( self ): . ...

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• allpy: NEWS annotate
• allpy: test/test.py annotate
• allpy: allpy/dna.py annotate

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• SVETKA, a program for multiple sequence alignments analysis
• Geometrical core

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• SVETKA, a program for multiple sequence alignments analysus
• SVETKA, a program for multiple sequence alignments analysis
• ETS sequence conservation

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus

PomBase . The S. pombe ACEdb database PomBase merges the annotated genomic sequence data with maps, genetics and bibliographic information. PomBase now includes: . PHYSICAL MAPS -- EUPOM physical maps showing the production status of cosmids undergoing sequencing. GENETIC MAPS . ... http://www.sanger.ac.uk/Projects/S_pombe/Pombase.shtml . ... None . ... ftp://ftp.sanger.ac.uk/pub/PomBase/ (FTP site) . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - RnaViz

Изучение статистики наиболее длинной общей подпослеовательности двух случайных подпоследовательностей является одной из самых интересных и трудных задач вычислительной математической биологии. В докладе будут представлены результаты, касающиеся статистического распределения общих подпоследовательностей в упрощенном (некоррелированном) варианте модели, т.наз. модели Бернулли . ...

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• Publication list, Olga Shamardina
• Publications

Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• Genebee Predicted Annotation Help
• GeneBee

... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Sequence Name . ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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• Task 9 (sequence annotation)
• Global and Local Alignment of A.A Sequences

Pleistocene Climatic Records of East and Central Asia Based on Micromorphological and Mineralogical Indicators of Loess-Paleosol Sequences . ... It is therefore necessary to study the sequences of processes in buried soils to provide information about pedogenesis as well as diagenesis. ... The loess-paleosol sequences of the Luochuan section, Shaanhi, China and of the Karamaydan and Chasmanigar sections in the Tajik Depression are well comparable especially for the Brunches chron. ...

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... Development of Acoustic Cavitation Excited by Periodic Sequence of Tone Bursts . V.G.Andreev, G.A.Romanenko, M.A.Burnin (Department of Acoustics, Faculty of Physics, Moscow State University, Moscow, Russia); V.L.Aleynikov (Center of Computer Engineering, Moscow State University, Moscow, Russia) . ... Time required for stable cavitation development was evaluated from temporal dependence of noise pressure harmonic components. ... 7 ultrasound bursts with 4-s repetition period. ...

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... РЕФЕРАТЫ СТАТЕЙ ПО РУКОКРЫЛЫМ / ABSTRACTS OF BAT ARTICLES . Молекулярная филогенетика семейства рукокрылых Vespertilionidae / Molecular phylogenetics of the chiropteran family Vespertilionoidae : Hoofer, S. R., Van Den Bussche, R. A. ? ... Murininae и Kerivoulinae ? ... Leuconoe , Selysius и Myotis ? ... Phylogenetic analysis of ribosomal gene sequences provides well-supported resolution for vespertilionid relationships across taxonomic levels. ...

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• Status of Plecotus macrobullaris - abstract
• Familial-level divergence of Cistugo - abstract
• Molecular phylogenetics of Yangochiroptera - abstract

Электронная библиотека Попечительского совета . ... Connell E.H. - Elements of abstract and linear algebra . ... Название: Elements of abstract and linear algebra . Автор: Connell E.H. Язык: . ... Associate elements in a domain 47 109 . ... Boolean algebras 52 . ... Fundamental theorem of algebra 46 . ... General linear group 55 . ... Idempotent element in a ring 49 51 . ... Irreducible element 47 110 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Bachman G. - Elements of Abstract Harmonic Analysis :: Электронная библиотека
• Bridges D.S. - Foundations Of Real And Abstract Analysis :: Электронная
• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::

... Volume 52, Number 3 (2011) . ... Modern state high pressure liquid chromatography of polycyclic aromatic hydrocarbons . ... Abstract . ... A. M. Banaru, G. A. Banaru . ... Photometric determination of macroquantities nickel and copper in natural and industrial objects in the form ethylendiaminotetraacetates . ... Effectiveness of the chemistry demonstrations in the course of general chemistry . ... Copyright (C) Chemisty Department of Moscow State University . ...

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• Moscow University Chemistry Bulletin Vol. 52, No. 3, P. 175 (2011)
• Influence of Zonal Factor and Agricultural Treatment on Atrazine Toxicity in
• Abstract Submission. III International Conference on Heterocyclic Chemistry, in

... Observational Zoo of Binaries with Compact Stars . Evolutionary Scenarios of Binary Systems . ... Evolution of Magnetic Rotators . ... Mixing types of E-P-A binary systems with non-zero orbital . ... Binary Pulsar Diversity and High Neutron Star Birth Velocity . ... Ejectors in Massive Binary Systems . ... Other Candidates for Ejecting Stars in Binary Systems . ... Cosmic Rays and Evolution of Binary . ... Sky in Gravitational Waves . ... Gravitational Waves from Coalescing Compact Binary Stars . ...

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• ADS Abstract Service Results

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• Input Formats
• SDPpred
• SDPsite - Algorithm Format requirements

... G. K. Zhavnerko, V. N. Staroverov, V. E. Agabekov, M. O. Gallyamov, I. V. Yaminsky . ... Atomic force microscopy, ellipsometry, and piezoquartz microweighing techniques were used to study the characteristic of N-octadecyl-3,4:9,10-perylene-bis(dicarboxydiimide) monomolecular layers... <more> . ... The influence of the chemical structure of film-forming material, the pressure of deposition, and the nature of substrate upon the film morphology has been studied by atomic force microscopy... <more> . ...

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... DNA Sequence [DNA Sequence] . Common information . ... since 1989-01-01 till today . ... biology ->molecular biology . ... http://www.informaworld.com/smpp/titl.. ... today . ...

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... Home News Program Committee Organizing Committee Program Plenaries Special Sessions Registration Abstracts Accommodation Important dates Contacts Poster Links Conference Venue Video . Abstracts . Abstract submission form . ... Abstract should not exceed 2 pages . ... automatic numbering (for equations, theorems, etc.), . ... Abstracts will be parsed automatically to compile the book of abstracts. ... TeX-file with the abstract should be submitted online through the abstract submission form . ...

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• Preliminary List of Plenary Talks International Conference Differential
• Ожидаемые пленарные доклады Международная конференция Дифференциальные
• Registration International Conference Differential Equations and Topology

Network Working Group A. McKenzie Request for Comments: 1110 BBN STC August 1989 A Problem with the TCP Big Window Option Status of this Memo This memo comments on the TCP Big Window option described in RFC 1106. ... Abstract The TCP Big Window option discussed in RFC 1106 will not work properly in an Internet environment which has both a high bandwidth * delay product and the possibility of disordering and duplicating packets. ... The uniqueness of the sequence number corrects for data duplication. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc1110.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/bcp/bcp139.txt
• Index of /pub/gentoo-portage/dev-ruby/abstract/