... annotate . ... Fixed bugs & refactored base.Alignment.process & it's helpers - there were a few name errors - process would previously behave bad if new alignment was shorter - refactored and simplified code for copying sequence contents . ... 1 import sys . bnagaev@83 . ... 3 from allpy.alignment import Alignment . ... 4 from allpy.block import Block . ... 6 p = Alignment ( open ( 'test.fasta' )) . ... 7 print "alignment length: %i " % len ( p ) . bnagaev@110 . ... bnagaev@120 . ...

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• allpy: allpy/rna.py annotate
• allpy: allpy/dna.py annotate
• allpy: debian/rules annotate

... annotate . ... Automated merge with ssh://kodomo/petri_dish . ... Smirnova@1 . ... 2 def __init__ ( self , num , bacteria , radius , delta , bact_r , full_lifetime ): . ... 3 self . ... bacteria = bacteria . ... delta = delta . ... bact_r = bact_r . ... 10 def step ( self , delta_t , env ): . ... 11 for bact in self . bacteria : . ... 12 bact . lifetime -= delta_t . ... bacteria , delta_t , self . ... delta , self . bact_r , self . ... collision ( collide , delta_t , self . ...

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• petri_dish: scale.py annotate
• petri_dish: Bacteria.py annotate
• petri_dish: tk1.py annotate

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• Geometrical core

A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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• Genebee Predicted Annotation
• Genebee Predicted Annotation - Advanced

... Improvement of Java type compiler using in language independent remote process calls in KBase project. 09/2011 ­ present: Moscow State University, Dept. of Bioengineering and Bioinformatics (Russia) Scientific Research Java developer and lecturer Enhanced the CAMPS web resource (http://webclu.bio.wzw.tum.de/CAMPS2.0/) that enables multiple classification of transmembrane proteins. ... Developed web based UI for visualization of a graph of transmembrane protein families. ... Sutormin RA, Mironov AA. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2014.pdf

. Name . Last Modified . Size . Type . Parent Directory / . - . Directory . Algorithm-Annotate-0.100.0-r1.ebuild . 2015-Aug-09 03:38:18 . 0.4K . text/plain . ChangeLog . 2016-Jan-25 18:35:37 . 2.4K . application/octet-stream . ChangeLog-2015 . 2015-Nov-09 07:11:44 . 2.8K . application/octet-stream . Manifest . 2016-Jan-25 18:35:37 . 1.8K . application/octet-stream . metadata.xml . 2016-Jan-25 02:06:09 . 0.4K . text/xml . lighttpd/1.4.35

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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• SCOP famyli: Rel/Dorsal transcription factors, DNA-binding domain
• Inquiry information || Parsimony algorithm
• SDPpred

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Pedersen C.N.S. - Algorithms in Computational Biology :: Электронная библиотека
• Tsarev S.P. - An Algorithm for Complete Enumeration of All Factorizations of a
• Lucks M. - New algorithm for fast integer polynomial factorization ::

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• SDPlight
• SDPsite - Algorithm Format requirements
• Algorithm

... Second, alignment of highly similar genomic sequences is useful for comparison of genome assemblies of the same organism or closely related ones. ... Nucleotide pangenome (NPG) of an input set of genomes is a set of aligned blocks, each block composed of orthologous fragments. ... Hemi-stable blocks (h-blocks) include no more than one fragment of a genome and lack a fragment of at least one of genomes. ... Blocks with repeats (r-blocks) include more than one fragment from one or several genomes. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/42.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• Program of MCCMB'05

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Align tool for DNA-protein complexes
• Nhunt: program for nucleic acid sequence similarity search

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• APOD: September 11, 1999 - The Annotated Galactic Center
• APOD: 2001 December 29 - The Annotated Galactic Center
• APOD: 2001 November 11 - An Annotated Leonid

... Next . 3.0.12 - 3.0.18 only, PHP 4 >= 4.0.0) cpdf_add_annotation -- Adds annotation . void cpdf_add_annotation ( int pdf document, float llx, float lly, float urx, float ury, string title, string content [, int mode]) . The cpdf_add_annotation() adds a note with the lower left corner at ( llx , lly ) and the upper right corner at ( urx , ury ). The optional parameter mode determines the unit length. If it's 0 or omitted the default unit as specified for the page is used. ...

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• Java Distributed Computing course annotation
• pdf_add_annotation
• pdf_set_border_style

Astronomy Picture of the Day . ... 11.11.1997 . ... Constellations of nearby stars include Sagittarius , Libra , Scorpius , Scutum , and Ophiuchus . ... Open clusters include M6 , M7 , M18 , M21 , M23 , M24 , M25 . Globular clusters include M9 , M22 , M28 , M54 , M69 , M70 . ... November 1997 . ... NASA Web Site Statements, Warnings, and Disclaimers . ... Publications with keywords: Galactic Center . Publications with words: Galactic Center . ... Sgr A*: Fast Stars Near the Galactic Center . ...

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• Астронет > The Annotated Galactic Center
• Астронет > An Annotated Leonid

Download Russian Journal of Biological Invasions, 2010, issue ? ... In the third issue of the Russian Journal of Biological Invasions, 2010, seven articles are presented, in which the questions on invasions and distribution of alien species in the regions of Ukraine and Russia are considered. ... Web-site of Russian Journal of Biological Invasions is developed and supported by the . Group of Bioinformatics and Modeling Biological Processes" IPEE RAS . ... Russian Journal of Biological Invasions . ...

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• Russian journal of biological invasions: Site map
• Russian journal of biological invasions: Contents
• Russian Journal of Biological Invasions: 2009, issue ? 2

SCIENTIFIC TASKS AND RESULTS . In the results of searching for new perspective solid state materials for the quantum electronics, non-linear optics and other fields of physics more than 200 various oxide compounds were synthesized and peculiarities of their atomic structure and physical properties are studied. Single crystals of 80 such the compounds are grown and thoroughly investigated. ... A family of oxide-ion conductors on the base of La 2 Mo 2 O 9 (30.10.09) . ... Main page ...

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An annotated checklist of the insectivores (Mammalia, Lipotyphla) of Vietnam . Abramov A.V., Dang Ngoc Can, Bui Tuan Hai Nguyen Truong Son . P. 57-70 . An annotated checklist of 32 extant species from 12 genera of the insectivores (Mammalia, Lipotyphla) of Vietnam is provided. ...

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• Russian Journal of Theriology

... 2) Faculty of Soil Science, Moscow State University, Moscow, 119899, Russia . ... Space variability of acidity and exchangeable cations is analysed in surface soil organic horizons of podzols in pine and birch forests on the northern tree line near the major pollution source in European North – the Pechenganikel smelter in the Kola Peninsula, Russia. Multivariate analysis show that both natural and anthropogenic factors effect the acidity and exchangeable cation content in soil organic horizons. ...

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• Pine Needle Chemistry near a Large Point SO2 Source in Northern Fennoscandia
• Koptsik G.N., et al. Soils of the National Park "Russian North".
• Koptsik G.N., et al. Response of pine forests to long-term air pollution at the

The QBoxLayout class lines up child widgets horizontally or vertically. ... QBoxLayout  ( QWidget * parent, Direction, int border=0, int autoBorder = -1, const char * name=0 )  . ... QBoxLayout takes the space it gets (from its parent layout or from the mainWindget()), divides it up into a row of boxes and makes each managed widget fill one box. ... The stretch factor applies only in the direction of the QBoxLayout, and is relative to the other boxes and widgets in this QBoxLayout. ...

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• Qt Toolkit - QGridLayout Class
• Qt Toolkit - QGroupBox Class

... Each day a different image or photograph of our fascinating universe is featured, along with a brief explanation written by a professional astronomer. November 11, 1997 . The Annotated Galactic Center . ... Constellations of nearby stars include Sagittarius , Libra , Scorpius , Scutum , and Ophiuchus . ... Open clusters include M6 , M7 , M18 , M21 , M23 , M24 , M25 . Globular clusters include M9 , M22 , M28 , M54 , M69 , M70 . ... About APOD > . ... NASA Technical Rep.: ...

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