... Fixed references to base interface according to previous changes (closes #12) . ... 1 import base . ... 3 class Monomer ( base . ... 12 """User defined protein; list of protein_sequences.""" . ... 15 class Sequence ( base . ... 18 class Alignment ( base . ... 21 def muscle_align ( self ): . 22 """ Simple align ths alignment using sequences (muscle) . ... 26 tmp_file = NamedTemporaryFile ( delete = False ) . ... 30 sequences , body = Alignment . ... 39 for monomer in body [ new_sequence ]: . ...

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• allpy: test/test.py annotate
• allpy: allpy/rna.py annotate
• allpy: allpy/dna.py annotate

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• ETS sequence conservation
• About this project
• Inquiry information || Rule of four sequences

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• SVETKA, a program for multiple sequence alignments analysis
• Geometrical core

Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• GeneBee
• Genebee Predicted Annotation Help

... annotate . ... ksenia_yashina@8 . ... 6 def __init__ ( self , delay = 10 , diam = 300 , num = 1 , env = 1 , reprod_a = False , reprod_s = False , life = 1 ): . ... 7 self . ... 15 def __repr__ ( self ): . ... 16 return "< %s , %s , %s , %s , %s , %s , %s >" % ( self . delay , self . diam , self . ... config ( text = "Stop" , command = self . ... config ( height = self . ... grid ( row = 0 , column = 2 , rowspan = 6 , padx = 50 , pady = 10 ) . ... config ( text = "Submit" , command = self . ...

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• petri_dish: Petri.py annotate
• petri_dish: Bacteria.py annotate

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus
• Nhunt

Automatic identification of horizontal gene transfer events in bacterial genomes Manolov A.1, Kanygina A. 1 2 Research Institute of Physical and Chemical Medicine, Moscow Moscow Institute of Physics and Technology, Moscow 2 Horizontal gene transfer (HGT) is a major force of bacterial evolution. ... Some of them are based on the multiple alignment of genetic sequences, other perform the search for HGT de novo (having no reference sequence). ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf

GRS . GRS is a graphic tool for retrieval and visualization of genome segments from partially or completely sequenced genomes. To facilitate visual identification of conserved genomic motifs, genes are color-coded according to their presumed functional roles. ... The gene string analysis option of GRS allows the identification of genes that are identically arranged in any pairwise set of genomes. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - PHYLO_WIN
• SAL- Other Scientific Fields - Chemistry, Biology Related - RnaViz
• SAL- Other Scientific Fields - Chemistry, Biology Related - Evalign

... SDPfox - the software package for the prediction of functional specificity groups and amino acid residues that determine the specificity using MPA. ... Amino acid residues that determine differences in protein functional specificity and account for correct recognition of interaction partners, are usually thought to correspond to those positions of a protein multiple alignment, where the distribution of amino acids is closely associated with grouping of proteins by specificity. ...

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• RNA Alignment
• Input Formats
• SDPpred

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Korf I., Yandell M., Bedell J. - Blast (Basic Local Alignment Search Tool) ::

Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 inherit eutils MY_P = ${PN}V${PV} DESCRIPTION= Fast multiple sequence alignments using partial-order graphs HOMEPAGE= http://bioinfo.mbi.ucla.edu/ poa / SRC_URI= mirror://sourceforge/poamsa/${ MY_P }.tar.gz # According to SF project page ...

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• http://mirror.msu.net/pub/gentoo-portage/sci-biology/diya/diya-1.0_rc4.ebuild

... Results . ... The main results of 2004 were the comparative analysis of genetic diversity of populations of saiga (Saiga tatarica). ... Molecular-genetic diversity and phylogeographic structure of moose population (Alces alces) in the different regions of European part of Russia and Ural were also studied. ... This testifies enough lengthy migrations of moose within the studied region and genetic unity of moose of Europe and Ural. ... Low genetic diversity of this species was determined. ...

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• Экологический Форум - Фундаментальная Экология: According to the UTM Women?s
• Экологический Форум - Фундаментальная Экология: according to the Skins website
• Экологический Форум - Фундаментальная Экология: according continent.

Next: Roche lobe overflow (stage Up: Principal Evolutionary States of Previous: Main-sequence stars (stage I) . ... The duration of this stage for a binary component is no longer a function of the stellar mass alone (as in the case of single stars), but also depends on the initial binary type (A, B or C) (Iben and Tutukov, 1985, 1987[ 74 , 75 ]): . The radius of the post-MS star rapidly increases (on a thermal time-scale)   and reaches characteristic giant values. ...

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• Main-sequence stars (stage I)
• Roche lobe overflow (stage III)

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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SCIENTIFIC TASKS AND RESULTS . In the results of searching for new perspective solid state materials for the quantum electronics, non-linear optics and other fields of physics more than 200 various oxide compounds were synthesized and peculiarities of their atomic structure and physical properties are studied. Single crystals of 80 such the compounds are grown and thoroughly investigated. ... A family of oxide-ion conductors on the base of La 2 Mo 2 O 9 (30.10.09) . ... Main page ...

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• Seminar in Polymer Physics

... Four X-class Flares . ... Credit Copyright: NASA , Solar Dynamics Observatory, GSFC Explanation: Swinging around the Sun's eastern limb on Monday, a group of sunspots labeled active region AR1748 has produced the first four X-class solar flares of 2013 in less than 48 hours. ... Ranked according to their peak brightness in X-rays , X-class flares are the most powerful class and are frequently accompanied by coronal mass ejections (CMEs), massive clouds of high energy plasma launched into space. ...

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• Journal "Peremennye Zvezdy"
• La Palma Eclipse Sequence
• Bakasa Eclipse Sequence

There is a special set of phase space functions which may be used to construct cuts and distributions in the framework of CompHEP. ... Key Character)(momentum set) . A set of momenta is represented as a set of digits. ... For example, C13 means a cosine of the angle between momenta and . The momenta are assigned to particles according to their sequence in the process name. ... energy of the particle set. ... mass of the particle set. ... transverse momentum of the particle set. ...

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... Главная -> Фильмы -> The World According to Garp . ... Фильмы . ... The World According to Garp . ... George Roy Hill . ... John Lithgow . ... George Ede . ... Brandon Maggart . ... John Irving . ... Brandon Roth . ... John Corcoran . ... Sabrina Lee Moore . ... Kaiulani Lee . ... Lee Strauss . ...

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• According to Spencer - Фильмы - Kinfo.ru
• According to Jim - Фильмы - Kinfo.ru
• The Gospel According to Phil.. - Фильмы - Kinfo.ru

Roman Sutormin rsutormin@gmail.com Professional experience 05/2013 ­ present: Lawrence Berkeley National Laboratory (Berkeley, CA, USA) Software developer Development of JSON based storage system used for keeping biological data involved in public KBase services. ... 10/2009 ­ 08/2011: Mail.Ru Group (Moscow, Russia), Software developer Support and development of data warehouse (PostgreSQL) and administration web tool (JBoss + GWT) on serverside of MMO game "Allods Online". ... 2013 Jul 1514(1):476. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/mol_biol_mosk_2006.pdf
• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2013.pdf
• http://storage.bioinf.fbb.msu.ru/~roman/bmc_genom_2013.pdf

... The zonal factor and different agricultural treatments influence of the toxicity of atrazine applied to the soil media was investigated on the example of wheat plants. ... The results of these investigation allowed me to draw a conclusion that the soils enriched with organic matter and the virgin soils (without agronomic treatment) are characterized by a minimum toxic effect of atrazine on the wheat plants. ...

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• Moscow University Chemistry Bulletin Vol. 55, No. 2, P. 79 (2014)
• Спецкурсы кафедры "Химическая энзимология. Основы биоинформатики и