... diff . ... Moved contents of block.py to base.py without any changes. author . ... 1.1 --- a/ allpy / block.py Tue Dec 14 20:51:53 2010 +0300 1.2 +++ b/ allpy / block.py Tue Dec 14 21:02:49 2010 +0300 1.3 @@ -1,172 +1,2 @@ 1.4 #!usr/bin/python 1.5 1.6 - import sys 1.7 - 1.8 - import alignment 1.9 - import sequence 1.10 - import monomer 1.11 - import config 1.12 -from graph import Graph 1.13 -from Bio.PDB import Superimposer 1.14 -from tempfile import NamedTemporaryFile 1.15 - ...

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• allpy: df571a5233fb
• allpy: allpy/base.py history
• allpy: allpy/base.py diff

... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• http://kodomo.cmm.msu.su/~dendik/data/python/2012-04-28/allpy.pdf

A program for automatic detection of aligned blocks in multiple protein alignment. Paste your alignment in fasta-format here: . ... The program works slow - it takes 8 seconds to process alignment of 6 sequences of length 500. The program's development is supported by Russian Foundation for Basic Research (grant 10-07-00685-a) and Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). ...

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AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

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Электронная библиотека Попечительского совета . ... Kandal A., Sugalski D., Tutsch L. - Perl 6 and Parrot Essentials . ... Название: Perl 6 and Parrot Essentials . Авторы: Kandal A., Sugalski D., Tutsch L. Аннотация: . ... bytecode, interpreter options (Parrot) . ... calls, Parrot-calling conventions . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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NPG-explorer : a new tool for nucleotide pangenome construction and closely related prokaryotic genomes analysis Boris Nagaev2, Maxim Nikolaev2, Andrei Alexeevski 1 1,2,3* A.N.Belozersky Institute Of Physico-Chemical Biology and 2Faculty ... @gmail.com Moscow State University, Moscow 119991, Russia 3Scientific Research Institute of System Analysis (NIISI RAS), Moscow Genomes of closely related bacteria have highly similar sequences of orthologous ... Blocks are classified into four categories. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf

Some additional inquiry information . ... Formats of alignments analysed . This program can analyse alignments of two formats - .fasta and .aln . ... But every analysed alignment should have either .fasta or .aln format! ... NMA0622 ---------------------MTDYSKTVNLLESPFPMRGNLA----KREPAWLKSWYEQ K---RYQKLREI---AKG-----RPKFILHDGPPYANG-DIHIGHAVNKILKDIIIRSKT QAGFDAPYVPG-WDCHGLPIEVMVEKLHGK------DMPK----ARFRELCREYAAEQIA . ... Aln format . ... After this blocks of the alignment are present. ...

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... Астронет | ... планета Астронет | ... Сверхновые . Яркая сверхновая в M82 . ... 1999 2000 2001 2002 . ... NASA Web Site Statements, Warnings, and Disclaimers . NASA Official: Jay Norris. ... Публикации с ключевыми словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . Публикации со словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . ... NGC 6188 и NGC 6164 . ... NGC 1999: к югу от Ориона . ...

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The global preference setting WYSIWYG_EXCLUDE can be set to make the plugin sensitive to what is in a topic, before allowing it to be edited. ... html - HTML tags (e.g. <div> , not including <br>), or . ... For example, setting it to table=background,lang;tr=valign will stop the translator from trying to convert any table tag that has background or lang attributes, and any tr tag that has a valign attribute back to Foswiki | ... This topic: System > Plugins > WysiwygPlugin > WysiwygPluginSettings . ...

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... Blocking receive . Up: Blocking Send and Receive Operations Next: Return status Previous: Message envelope . ... MPI_RECV (buf, count, datatype, source, tag, comm, status) . ... A message can be received by a receive operation if its envelope matches the source, tag and comm values specified by the receive operation. The receiver may specify a wildcard MPI_ANY_SOURCE value for source, and/or a wildcard MPI_ANY_TAG value for tag, indicating that any source and/or tag are acceptable. ...

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CUDA Device Query (Driver API) statically linked version There are 4 devices supporting CUDA Device 0: GeForce GTX 295 CUDA Capability Major revision number : 1 CUDA Capability Minor revision number : 3 Total amount of global memory: 939524096 bytes Number of multiprocessors: 30 Number of cores: 240 Total amount of constant memory: 65536 bytes Total amount of shared memory per block: 16384 bytes Total ...

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PHP Manual . ... Operators . ... Comparison operators, as their name implies, allow you to compare two values. ... Equal . TRUE if $a is equal to $b. $a === $b . ... TRUE if $a is less than or equal to $b. $a >= $b . ... TRUE if $a is greater than or equal to $b. Another conditional operator is the "?:" (or ternary) operator, which operates as in C and many other languages. (expr1) ? ... This expression evaluates to expr2 if expr1 evaluates to TRUE , and expr3 if expr1 evaluates to FALSE . ...

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... About lab . ... MSU Graphics & Media Lab (Video Group) . The filter is intended for recovering visual quality of video ripped from DVD (for example, when it contains 4 hours of video data), VideoCD or after decompressing by H.261, H.263, H.264, DivX, XviD, etc. The algorithm decreases blocking artifacts, significantly improving visual quality of video. Filter automatically determines the blockiness's strength on the frame and in the certain part of it, preserving the maximum of details. ...

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... Style Sheets in Communicator . Using Cascading Style Sheets to Define Styles . ... Inheritance of Styles . Defining Style Sheets with the <STYLE> Tag . Defining Style Sheets in External Files . Defining Classes of Styles . ... Combining Style Sheets . ... Setting Border Widths, Color, and Style . ... Comments in Style Sheets . ... Style Sheet Properties . Font Properties . ... Font Style . Text Properties . ... Style Sheets Ink Home Page . Overview of the Style Sheet . ...

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. Библиотека электронных публикаций . R. P. Gruber, L. F. Wagner, R. Block, S. Matthews. Subjective Time vs. Proper (Clock) Time (PDF file, 424 Kb) . Российский междисциплинарный семинар по темпорологии: ретроспектива. Доклад "Субъективное и астрономическое времена" (Ronald P.Gruber, L.F.Wagner, R.Block, S.Matthews). Апрель 2002 .

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. Name . Last Modified . Size . Type . Parent Directory / . - . Directory . ChangeLog . 2016-Jan-25 19:47:14 . 2.2K . application/octet-stream . ChangeLog-2015 . 2015-Nov-09 07:11:44 . 0.8K . application/octet-stream . Manifest . 2016-Jan-25 19:47:14 . 2.2K . application/octet-stream . blocks-0.1.4_pre131210-r1.ebuild . 2015-Aug-24 13:49:19 . 1.3K . text/plain . blocks-9999.ebuild . 2015-Aug-09 03:38:18 . 1.2K . text/plain . metadata.xml . 2016-Jan-25 02:06:09 . 0.4K . text/xml . lighttpd/1.4.35

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• Index of /pub/gentoo-portage/sys-block/
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. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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Hide Zen home . ... Index . ... Do we really need them for database indexing ? ... We need simple numbering scheme, so that for any given point we could easily calculate the number of "pixel", this is what HealPix provides and lacks HTM. ... During Rtree queries the number of index blocks read is several times greater than during Q3C queries. ... But in Q3C scheme, as we showed before, the circle is segmented, so we extract from the database only a few percents more data than occur in the circle. ...

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... Analysis of resonant excitation of layered and block media on the basis of discrete models" . Sadovskii V.M. and Chentsov E.P. Resonant processes in structurally inhomogeneous materials of layered and block microstructure are studied in the framework of discrete models. Natural frequencies of longitudinal motion in a linear monato\-mic chain modeling a layered medium are determined for various boundary conditions. ... This special resonant frequency does not depend on the chain length. ...

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