... annotate . ... 3 This release collects a lot of changes that happened during half year . ... 8 * greatly improved markups support and markups IO . ... 12 * and a lot of work on ` blocks3d ` and ` pair_cores ` with many new features , . ... 39 * new : added ` MarkupIOMixin ` which simplifies defining savable markup classes . ... 68 * new : Alignments , Sequences and Blocks now can have Markups , see the wiki . ... 69 * new : File format 'markup' for storing alignment with arbitrary markups . ...

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• allpy: allpy/base.py diff

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Inquiry information || Distances

TreeDL: a language for description of graph structures and operations on them" . Demakov A.V. Some methods of graph representation and processing in object-oriented languages are considered. Desirable features and a tool support of a language for description of graph structures and operations on them are analyzed. The TreeDL language having these features is described and compared with other approaches. PostScript (in Russian) (244KB) . ... Demakov A.V. e-mail: demakov@ispras.ru ...

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• "Implementation of the Lagrangian approach to the description of gas-particle

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Genebee Predicted Annotation - Advanced
• Genebee Predicted Annotation

Protein 3D architectures and structural motifs: automated annotation E.A. Aksianov1, A.V. Alexeevski 1 2 1,2 Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia evaksianov@gmail.com, aba@belozersky.msu.ru Description of a protein 3D structure in terms of structural domains, architecture, topology and structural motifs is a hard problem. ... The core is extended by small -sheet (unit_3). ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf

RNA Tertiary Structure Modelling . ... Two steps to fold coarse-grained model of RNA tertiary structure . ... fill in RNA secondary structure form with CT format (also with pseudoknots); . ... push "Finish Step #1" button to obtain secondary and intermediate* structures. * intermediate structure is the structure with minimum of "free energy" contains formed helixes and stacking, but without tertiary interactions . RNA secondary structure form . ... some useful RNA secondary structure databases: . ...

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• %TOPICTITLE% (9 vs. 10) - TWiki
• %TOPICTITLE% (15 vs. 16) - TWiki

. PHP Manual . Prev . Next . (3.0.13 - 3.0.18 only, PHP 4 >= 4.0.0) mcal_event_set_description -- Sets the description of the streams global event structure . int mcal_event_set_description ( int stream, string description) . mcal_event_set_description() sets the streams global event structure's description to the given string. Returns TRUE . Prev . Home . Next . mcal_event_set_title . Up . mcal_event_set_start

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• pdf_add_bookmark
• pdf_add_annotation
• mailparse_msg_get_structure

... DevHlp_Security This devhlp allows to open a file for read access in the Init routine of a BASEDEV . ... returned: size of file SYIOpenFile ends Valid at INIT time only. ... This routine uses the corresponding function of the miniFSD , not normal file I/O, thus access is restricted. ... Although the size argument of the data structure implies, I'd recommend to better not read more than 32K at a time. ... DL = 044h This function will return the table of security helper functions for file access. ...

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• Heliophysics, Internal structure and seismology
• Long description of example illustrating table row height calculations and

... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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• SAI OCL Catalog Structure
• SAI Open Star Clusters (SAI OCL) Catalog
• SAI OCL Catalog Virtual Observatory

... Микс 193 A 131 A 171 A 211 A 304 A Корона Магнитограмма . 211 + 193 + 171 . Description . ... LASCO (Large Angle and Spectrometric Coronagraph)- инструмент на космическом аппарате SOHO, поставляющий изображения солнечной короны, на которых свет, идущий непосредственно от Солнца, заблокирован с помощью искусственного затмения, создаваемого самим аппаратом. ... The form and the location of the magnetospheric boundary are defined by pressure balance of the solar wind and geomagnetic field. ...

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. General Information about the E.coli protein, DNA GyraseB . General Studies of the Protein Structure (PDB ID: 1ei1) . General description of the 3D structure . Description of Secondary Structure . Illustration of polypeptide contact areas between Amino Acid Residues and the Functional Ligand . ArginylSerylSerine . Meanless Findings on the web (class time tasks...and what the russian students do instead) . Chemical Element: Beryllium . What is a Parasaurolophus? . Santesson Elly, 2004

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• petri_dish: Bacteria.py history
• petri_dish: Petri.py history
• petri_dish: scale.py history

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

15. PC Crystal Chemistry Analysis of Organic Crystal Structures

16. Multiparameter Stability Theory with Mechanical Applications

17. : Package ucar.multiarray

18. RNA Kinetics main page

19. Align tool for DNA-protein complexes

20. SAL- Other Scientific Fields - Chemistry, Biology Related - RnaViz