... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Notes on searching by similarity

Annotation of the graduate work of 6th-year student A.S. Voronov X-ray investigation of periodical and nonperiodical systems with small layer thickness. ... X-ray optical elements are widely used for guiding and forming synchrotron beams and metrological methods of production and postproduction X-ray optical elements control are getting more and more important. ... In this work X-ray optical elements control method was performed. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2013/Safronov_Fedotov_en.pdf
• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2010/Yagnyatinskiy_Konovko_en.pdf
• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2012/Ryabov_Angeluts_en.pdf

... Lectures : Nanomagnetism / Fundamentals I and II 1. a. b. c. d. 2. a. b. c. d. 3. a. b. c. d. e. Introduction Diamagnetism Paramagnetism Ferro-, Ferri- and Antiferromagnetism Magnetic susceptibility and permeability Magnetic order and magnetic interactions Magnetic exchange (direct, indirect, and superexchange) Dipolar magnetic interaction Spin-orbit interaction Local magnetic moments and spin-polarized electron band structure ...

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• Structure/microstructure and their interplay in nanomaterials and layered

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• RNA Kinetics main page

... All contacts alignment . ... Blue background means a contact with backbone phosphate. ... HBond with major groove + contact through a molecule of water with backbone phosphate; . ... contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + engagement in hydrophobic cluster + contact through a molecule of water with backbone phosphate; ...

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• DNA/RNA-Protein structures
• About this project
• Hydrophobic clusters

... Геология >> Геотектоника | ... Добавить новое сообщение . ... Учебное пособие "Введение в тектонофизику". Гончаров М. А., Талицкий В. Г., Фролова Н. С. Ответ. ... Тезисы научной конференции ЛОМОНОСОВСКИЕ ЧТЕНИЯ, ноябрь 2011 года СЕКЦИЯ ГЕОЛОГИЯ: . ...

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... Heterogeneous networks of multicomputers and the ch_nexus device . ... The startup files for the ch_nexus device are somewhat different, but easy to understand. ... If you have built MPI with ch_nexus device support on multiple platforms, you may not necessarily have the same startup_dir and startup_exe attribute values. ... The startup_count attribute indicates the number of nodes to be used on the SP-2 (in addition to any nodes you may be using on other workstations or multicomputers). ... Центры ...

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• Special features of different systems | PARALLEL.RU -
• Derived datatypes | PARALLEL.RU - Информационно-аналитический центр по
• Partitioning of Cartesian structures | PARALLEL.RU -

... quantum optics - different types of the light interference, . ... Another branch of my activity covers the problem of biphoton interference (1997-). ... Also we developed the effective interferometric protocols to generate some specific quantum states of light (the Bell states) in the most common case: broad spectrum of the pump (in particular for the femtosecond laser), any type of phase-matching (either type-I or type-II), and arbitrary length of nonlinear crystals. ... QUANTUM TELEPORTER . ...

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extra:main ]] . CompHEP . ... Script for including cuts, kinematics, or regularizations into batch.dat file . Script for CompHep cross-sections energy dependence calculation . ... When you done CompHep calculations for the process under study at one energy, you may easely get cross-sections energy dependence running script cs_energy_dep.pl . ... For every energy point the script modifies results/batch.dat file and runs CompHep script num_batch.pl to calculate given process cross-sections. ...

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• download:rn-031116 [CompHEP]
• overview [CompHEP]
• extra:model:main [CompHEP]

DVM-system of parallel program development . Goals and structure . ... 2.1 C-DVM and Fortran DVM parallel program development . ... Using C-DVM and Fortran-DVM languages a programmer deals with the only version of the program both for sequential and parallel execution. ... These rules are syntactically organized in such a manner that they are "transparent" for standard C and Fortran compilers and doesn't prevent DVM-program execution and debugging on workstations as usual sequential program. ...

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• DVM debugger. Detailed design. Part 4

О лаборатории . ... Лаборатория теоретической биофизики . ... System requirements : python 2 (2.6 and higher), python openbabel library, python numpy library. ... The memgen script makes a bilayer membrane from different phospholipids and other lipid compounds (e.g. cholesterol). ... Biochemistry (Moscow) Supplement Series A: Membrane and Cell Biology, 2011, Vol. ... Нет комментариев " Python membrane generator for MD simulations " . ... 2011 ERG Research Group . ...

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• OPLS-AA patch for different types of molecules ERG Research Group: Лаборатория
• OPLS ERG Research Group: Лаборатория теоретической биофизики
• topology ERG Research Group: Лаборатория теоретической биофизики

... Organizational Issues of Paleopedology Commission: status in the International Scientific Communities and internal structure. ... The discussion is open about the renewal of the representative charges of the group: unanimously, the assembly confirms the charges of Edoardo Costantini, Alexander Makeev and Francesco Malucelli for both Subcommission and Commission. ... The President, Edoardo Costantini, presents a proposal (by Catt and Yaloon) about the founding of a separate society of Paleopedology. ...

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• An International Consensus on Calcareous Paleosol Classification
• Introduction
• STUDYING POLICY DELIVERY SYSTEMS

... About Trac . ... Trac uses a directory structure and a database for storing project data. ... A new Trac environment is created using trac-admin : $ trac-admin /path/to/myproject initenv . ... For example, to connect to a PostgreSQL database on the same machine called trac , that allows access to the user johndoe with the password letmein , use: postgres://johndoe:letmein@localhost/trac . ... Note: don't confuse a Trac environment directory with the source code repository directory. ...

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• WikiProcessors тАУ Tanchiki

... Academic . ... Academic Departments . ... Partners . Conferences . ... All partners . ... The international academic conference . ETHNIC PRESS GENESIS, STRUCTURE, DEVELOPMENT TRENDS . ... Conference proceedings will be published at the endљ . of the Conference as a collection of scientific articles and available in electronicљ . ... Organizing Committee address: Department of Journalism, Room 325 A, 3d floor, Main Academic Building, 42 Kulakovskogo St., Yakutsk, 677000. ...

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COMPARATIVE ANALYSIS OF THE STRUCTURE OF THE CHANNEL DOMAIN OF PENTAMERIC LIGAND-GATED ION CHANNELS Popinako A.V., Shaytan K.V. Lomonosov Moscow State University, Dept. of Bioengineering, Russia, 119992, Moscow, Leninskie gori 1/73, tel. ... Molecular modeling remains the only approach for studying of the 5-HT3 receptor structure, which is needed for understanding of its role in neurophysiological processes and predicting specific ligands that may serve as drugs during different neurological diseases. ...

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• http://www.mce.biophys.msu.ru/archive/doc15811/doc.pdf
• MCE-2016
• Heat transfer in non-uniform by structure monodisperse system, containing

Post-Telbessian Strike-Slip-Related Compressional and Extensional Structures in Central Kazakhstan . ... Faults controlled post-telbessian structuring are of Late Devonian - Early Permian age; they are usually deep-seated. ... Thus, post-telbessian structure of Central Kazakhstan has developed under condition of relatively monotonous stress field with sub-longitudal orientation of main compression and latitudal orientation of main extension. ...

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• China
• Europrobe1

... Analytical Bionanoscopy - study of morphology and properties of biomacromolecules and biological systems using different methods of scanning probe microscopy with applications to . molecular mechanism of protein crystal growth . ... Education in Nanotechnology and Nanoscopy - development of distant education technologies (open learning, probe microscopy practical studies via Internet, multimedia presentations), lectures in nanoscopy and nanotechnology, composition of SPM bibliography databases. ...

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• Femtoscan SPM
• Список статей:
• Average slope subtraction

... Classification of the engineering geological Earth's structures and their characteristic (Project manager – Prof. Trofimov V.T.; investigator – Ass. ... Artificial soils as a result of technogenesis (Project manager - Prof. Trofimov V.T.; investigator - Ass. ... Tgheoretical problems of evolution of engineering geological Earth's conditions at the epoch of technogenesis (Project manager - Prof. Trofimov V.T.; investigator – Senior Research Worker Kyrinov M.B.); . ... Project manager . ... 1998-2000 ...

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• Faculty of Geology >> Departments
• Department of Lithology and Marine Geology - Laboratories
• Faculty of geology Moscow State Lomonosov University

... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Universitetsky 13, Moscow 119899, Russia, shev@sai.msu.ru . ... 1.Sternberg State Astronomical Institute, 119899, Moscow, Russia. shev@sai.msu.ru . ... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Moscow 119992, Russia, shev@sai.msu.ru . ... 119992 Moscow, Russia; . ... 2Sternberg Astronomical Institute, Moscow University, Moscow, 119992, Russia, . ... Moscow, 119992, Russia shev@sai.msu.ru . ...

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• Пугачева Светлана Георгиевна

... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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• SAI OCL Catalog Structure