... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

Еще в разделе: (Показать все результаты (>147) - bioinf.fbb.msu.ru/ )

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

Еще в разделе: (Показать все результаты (>6995) - mouse.belozersky.msu.ru/ )

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

Еще в разделе: (Показать все результаты (>6357) - monkey.belozersky.msu.ru/ )

• ETS_all_contacts alignment
• SDP home page
• About this project

The topic of a student research: Patterns recognition of Supersecondary structures Abstract The goal of this project to prove the hypothesis that proteins with identical supersecondary structure have common sequence patterns even if they belong to different protein families and have very low sequence similarities. ... Application of usually used methods of sequence alignment to find the conserved positions is not available here because of very low sequence similarity (less than 10%). ...

Еще в разделе: (Показать все результаты (>43137) - kodomo.fbb.msu.ru/ )

• allpy: 4a2341bc90b1 allpy/pdb.py
• allpy: 4a2341bc90b1
• allpy: allpy/base.py diff

Anchoring patterns and point mutations in pairwise alignments using AlignMe X-ray crystal structures have revealed that numerous membrane proteins, such as GPCRs or some secondary transporters, despite the lack of any detectable sequence similarity between them, still share very similar 3D structures. ... The novel feature allows the user to define any number of anchors with varying strength for improving the quality of pairwise alignments in challenging cases lacking notable sequence similarity. ...

Еще в разделе: (Показать все результаты (>343) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/167.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf

... Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment . ... Название: A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment . Авторы: Lathrop R.H., Rogers Jr R.G., Smith T.F. Аннотация: . A rigorous Bayesian analysis is presented that unifies protein sequence-structure alignment and recognition. ...

Еще в разделе: (Показать все результаты (>14719) - lib.mexmat.ru/ )

• Heggins D., Taylor W. - Bioinformatics: Sequence, Structure and Databanks ::
• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::
• Pedersen C.N.S. - Algorithms in Computational Biology :: Электронная библиотека

... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

Еще в разделе: (Показать все результаты (>5033) - kodomo.cmm.msu.ru/ )

• Conservative Amino Acid Residues
• Structure Alignment
• Summary Table Sequence

... We consider now change-points in different components of the frequency spectrum of typical EEG signal. ... Only few change-points in power are found in the initial EEG (unless a prominent alpha rhythm is present). ... Change-points in different frequency components of the EEG . ... Change-points in different types of the EEG alpha activity without substantial gradual changes . ... As can be seen from Fig. 7.3, the program reliably detected the change-points despite of such variety of signal patterns...

Еще в разделе: (Показать все результаты (>63) - brain.bio.msu.ru/ )

• Change-points at different levels of the hierarchy of EEG segmental...
• Other prospects of the change-point based analysis
• Nonparametric approaches to the description of EEG piecewise stationary

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

Еще в разделе: (Показать все результаты (>2474) - crydee.sai.msu.ru/ )

• RELATED WORK

... Research programm of the laboratory-chair< . ... Laboratory-chair of Discrete mechanics on a microscopic scale . ... Thus the structures of the physical world are not physical objects but physical processes. ... The primitive entity is called a material point. ... The value of the property “existence” of the material point varies from “the material point does not exist” to “the material point exists” by this process. ... Let call this structure a dynamical graph or a d-graph. ...

Еще в разделе: (Показать все результаты (>505) - chronos.msu.ru/ )

Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

Еще в разделе: (Показать все результаты (>211) - lnfm1.sai.msu.ru/ )

... Effect of mutations in the beta5-beta7 loop on the structure and properties of human small heat shock protein HSP22 (HspB8, H11). ... Because conservative Lys residues located in the beta5-beta7 loop and in the beta7 strand appear to play an important role in the structure and properties of HSP22, mutations in this part of the small heat shock protein molecule might have a deleterious effect and often correlate with the development of different congenital diseases. ...

Еще в разделе: (Показать все результаты (>95) - biochem.bio.msu.ru/ )

• Structure, properties, and probable physiological role of small heat shock
• Effect of mutations mimicking phosphorylation on the structure and properties
• The pivotal role of the beta 7 strand in the intersubunit contacts of different

. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

Еще в разделе: (Показать все результаты (>8) - mouse.genebee.msu.ru/ )

• Nhunt
• StructAlign help

... Class . ... Provides an abstraction for multidimensional array access, some concrete implementations, and ways to view a MultiArray as if it had a different structure. ... This interface defines the services required by MultiArrayProxy to manipulate indexes and the dimensions of a MultiArray. ... In the following, we use the unadorned term "array" to mean the Java language construct, and the term "multidimensional array" for the mathematical abstraction modeled by the MultiArray class in this...

Еще в разделе: (Показать все результаты (>60) - angel.cs.msu.su/ )

• : Overview

... There are different techniques available that may be used to achieve an effect of focusing of acoustic energy. ... Although such type of array is known, there are comparatively little available experimental data concerning the radiation of finite amplitude wave by it. The aim of the paper is to present results of examination, both experimental and numerical, of the pressure field of the arrays composed of axisymmetric areas of different structure radiating the finite amplitude wave. ...

Еще в разделе: (Показать все результаты (>271) - acs366.phys.msu.su/ )

Выберите категорию обращения: Общие вопросы Отчеты Рейтинги Диссертационные советы Конкурсы Ввод данных Структура организаций Пользователи Проблемы с регистрацией\входом в систему . ... Другие названия журнала: PHYSICS OF LOW DIMENSIONAL STRUCTURES , Phys. Low-Dim. ... Phys. of Low-Dimensional Structures , Phys.Low-Dimensional Structures . ... Oreshkin A.I. , Maskova N.S. , Panov V.I. , Radchenko I.V. , Wu K.H. , Xue Q.Z. , Nagao T. в журнале PHYSICS OF LOW-DIMENSIONAL STRUCTURES , ? ...

Еще в разделе: (Показать все результаты (>5037) - istina.msu.ru/ )

• Kudryavtseva AV - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Random Structures and Algorithms - журнал | ИСТИНА - Интеллектуальная Система
• Tikhomirov V.S. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

Next: SYSTEM CALL: msgget() Up: Internal and User Data Previous: Kernel msqid_ds structure . The kernel stores permission information for IPC objects in a structure of type ipc_perm . ... struct ipc_perm { key_t key; ushort uid; /* owner euid and egid */ ushort gid; ushort cuid; /* creator euid and egid */ ushort cgid; ushort mode; /* access modes see mode flags below */ ushort seq; /* slot usage sequence number */ }; . ... Finally, the slot usage sequence number is stored at the end. ...

Еще в разделе: (Показать все результаты (>346) - itpm.msu.su/ )

• NIS versus NIS+
• Kernel semid_ds structure
• Internal and User Data Structures

The first major global tomographic study was made by Professor Dziewonski in early 70's. The idea of this study was that the travel time anomalies observed for many ray paths, criss-crossing the Earth between various points near the Earth's surface and reaching different depths in its interior, could be resolved formally into a three-dimensional (3-D) model. ... How to use Harvard's 3-D Earth models? Now, you can download source codes in order to use Harvard's recent Earth models. ...

Еще в разделе: (Показать все результаты (>830) - geo.web.ru/ )

О лаборатории . ... Лаборатория теоретической биофизики . ... System requirements : python 2 (2.6 and higher), python openbabel library, python numpy library. ... The memgen script makes a bilayer membrane from different phospholipids and other lipid compounds (e.g. cholesterol). ... Biochemistry (Moscow) Supplement Series A: Membrane and Cell Biology, 2011, Vol. ... Нет комментариев " Python membrane generator for MD simulations " . ... 2011 ERG Research Group . ...

Еще в разделе: (Показать все результаты (>57) - erg.biophys.msu.ru/ )

• OPLS-AA patch for different types of molecules ERG Research Group: Лаборатория
• OPLS ERG Research Group: Лаборатория теоретической биофизики
• topology ERG Research Group: Лаборатория теоретической биофизики

Additional topic data, program-generated or from TWikiForms , is stored embedded in the topic text using META: tags . ... Meta Data Syntax . Meta Data Specifications . ... META:FORM . ... By default, TWiki stores topics in files on disk, in a really simple and obvious directory structure. ... Order of fields within the meta variables is not defined, except that if there is a field with key name , this appears first for easier searching (note the order of the variables themselves is defined). ...

Еще в разделе: (Показать все результаты (>33010) - dualopt1.cmm.msu.ru/ )