... files . ... allpy/base.py . ... 1.52 + Sequence = cls. sequence _type 1.53 + not_gap = lambda (i, char): char != - 1.54 + no_gaps = line.replace( - , ) 1.55 + sequence = Sequence (no_gaps, name , description , source) 1.56 + for i, (j, char) in enumerate(filter(not_gap, enumerate(line))): 1.57 + self[j][seq] = sequence [i] 1.58 + self. sequences .append( sequence ) 1.59 + 1.60 + @classmethod 1.61 + def from_fasta(cls, ... 2.6 2.7 - Return a dict of { sequence header: sequence body }. ...

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• allpy: 80043822a41e
• allpy: allpy/base.py diff
• allpy: 9369dbad919d allpy/block.py

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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... Previous Changeset . Next Changeset . ... manip_frame1 = Frame(automata_window, padx=10, pady=5) €а . ... up = Button(manip_frame1, text="Up", command=handlers.upwards, width=10) €а . ... Label(size_window, text="Current size of window :").pack(side="top", fill="x") €а . ... Label(size_window, text="Current window size :").pack(side="top", fill="x") €а . ... menu_action.add_command(label="Fill randomly", command=handlers.fill_randomly, €а . ... menu_action.add_command(label="Fill randomly", €а . ...

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• Changeset 6:721fdbb815c8 тАУ Cyclyc Cell Automata
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• Changeset 52:6630f82e4675 тАУ Cyclyc Cell Automata

... All contacts alignment . ... Blue background means a contact with backbone phosphate. ... HBond with major groove + contact through a molecule of water with backbone phosphate; . ... contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + contacts through water molecules both with backbone phosphate and major groove; . ... HBond with major groove + engagement in hydrophobic cluster + contact through a molecule of water with backbone phosphate; ...

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• SVETKA, a program for multiple sequence alignments analysus
• SVETKA, a program for multiple sequence alignments analysis
• ETS_hydrophobic_interactions

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• SVETKA, a program for multiple sequence alignments analysis
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• S : rm_systems

Using stand-alone SDPfox . ... To add a new specificity group, type in the group name and press "Add" . To change composition of specificity groups, select two groups: first, from which to remove sequences, and second, to which to add sequences. ... For a constructed grouping, it is possible to run SDPgroup, re-randomize grouping or move sequences according to the best weights (see algorithm) under the link 'SDPgroup'. ... These sequences are likely to be re-grouped after SDPgroup is performed. ...

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• RNA Alignment
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GDE . The GDE (Genetic Data Environment) is a set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. ... ftp://ftp.bmc.uu.se/pub/linnaeus/software/gde/ . Source Code Availability: Yes . ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Korf I., Yandell M., Bedell J. - Blast (Basic Local Alignment Search Tool) ::
• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/179.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/18.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/120.pdf

Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=6 PYTHON_COMPAT=( python2_7 python3_{4,5} ) inherit distutils-r1 python-r1 DESCRIPTION= Python interface for the SAM/BAM sequence alignment and mapping format HOMEPAGE= https :// github.com / pysam-developers / pysam http://pypi.python.org/pypi/ pysam SRC_URI= https :// github.com / ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc660.txt
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AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

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• AliComp - GeneBee Alignment Comparison Help
• Multiple alignment
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MOSCOW STATE UNIVERSITY -- Faculty of Biology -- Department of Human Physiology -- . ... Our interest is the secret springs of work of a brain. How can a new idea be born in the brain if the physical environment remains constant? ... What mechanisms of the brain are broken in schizophrenia? ... For this purpose we create brain-computer interfaces (BCI) based on modern methods of computational electroencephalography. ... Department of Human Physiology . ... Former Visitors . ... Former students . ...

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• Links -- Laboratory for Neurophysiology and Neuro-Computer Interfaces (MSU,
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Next: Running the example Up: Java Interface Previous: Anatomy of an operation . ... As we have seen in figure 6.2 and from the discussion of the previous section, an operation invocation consists of the following elements: . a name of the operation . ... The conceptual graph depicted in figure 6.3 shows how to translate the operation invocation for deposit( 100 ) using the DII (again concept nodes are denoted by white rectangles and relation nodes by black rectangles). ...

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• Dynamic Invocation Interface
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There are the following elements of the user interface in the CompHEP package: On-line Help, Menu, Message, String Editor, Table Editor, Diagram Viewer and Plot Viewer . You can control them using the Arrows keys, Enter , Esc 1 , Backspace , PgUp / PgDn 2 keys and the mouse click. CompHEP is sensitive to the left mouse button release. ... 1 Use the 'Ctrl [' sequence if the Esc key is absent on your keyboard . ... On-line Help. Menu. ... String Editor. ... Diagram Viewer. Plot Viewer. ...

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... The basic tools for this are called ifconfig (where ``if'' stands for interface), and route. ifconfig is used to make an interface accessible to the kernel networking layer. ... For instance, the default subnet mask is derived from the network class of the IP-address, such as 255.255.0.0 for a class-B address. ifconfig is described in detail at the end of this chapter. route allows you to add or remove routes from the kernel routing table. ... The Loopback Interface . ... Routing through a Gateway ....

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• Ethernet Interfaces
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Wireshark · · · · · (Win, Mac, Linux) Open Source (http://www.wireshark.org) · · · ( ) · 2 1 · # usermod ­a ­G wireshark user · wireshark root user@host:~$telnet ya.ru 80 Trying 213.180.193.3.. ... MAC 2. MAC IP ARP 3. L4 Interface # 1 2 3 4 Domain # 1 1 Eth Address 00:00:00:00:00:0a 00:00:00:00:00:09 IPv4 Address 10.0.1.2 10.0.1.1 10.0.2.2 10.0.0.3 Flow # 1 2 Src Itf # 1:49153 3:49153 Dst Itf # 4:234 1:432 Protocol TCP UDP Edges 1-2 1-2 .. ...

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Starting from the PC GAMESS version 6.3, the support of the new proprietary parallel mode communication interface (which is called P2P interface) was implemented as the part of PC GAMESS. ... The PC GAMESS/Firefly specific parallel MP2 energy and energy gradient method=1 modules supports P2P communication model. ... The dynamic library in which the P2P interface is implemented. ... Starting from the PC GAMESS v. 6.4, the DLB (dynamic load balancing) functionality was added to P2P interface. ...

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... Войти в систему . ... Другие названия журнала: J Colloid Interface Sci , J. Coll. ... Interface Science показать полностью.. J. Colloid Interface Sci , J. Colloid and Interface Science , J. of Colloid and Interface Science , J.Coll.Int.Sci , J.Colloid Interface Sci . ... Drozdova O.Yu , Pokrovsky O.S. , Lapitskiy S.A. , Shirokova L.S. , Gonz?lez A.G., Demin V.V. в журнале Journal of Colloid and Interface Science , издательство Academic Press (United States) , ? ...

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• Surface and Interface Analysis - журнал | ИСТИНА - Интеллектуальная Система

... MPI: Message Passing Interface - русскоязычная страница . ... Стандарт MPI-2: Extensions to the Message-Passing Interface включает следующие основные группы функций: . ... Tutorial on MPI: The Message Passing Interface . ... Writing Message-Passing Parallel Programs with MPI - учебный курс по MPI, созданный в EPCC (The University of Edinburgh). ... 18 Июля 1997 г. Опубликован стандарт MPI-2: Extensions to the Message-Passing Interface. ... MPI: A Message-Passing Interface Standard . ... Центры . ...

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NCR 53CF94, 53CF96 FLYER INFORMATION The NCR 53CF94 and 53CF96 Fast SCSI Controllers are high-performance CMOS devices conforming to ANSI standards X3.131-1986 (SCSI-1) and X3.131-199X (SCSI-2) for the Small Computer Systems Interface (SCSI). ... The NCR 53CF94 and 53CF96 feature 10 megabytes per second (MB/s) Fast SCSI-2 data transfers, improved single-ended SCSI operation, a 24-bit transfer counter, and enhanced SCSI-2 command functionality. ...

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• Главная последовательность. The Main Sequence
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