... Fixed ReST warnings from docstrings in allpy.base . ... allpy/base.py . ... Sequences don't contain gaps 1.40 # - see sequence .py module 1.41 @@ -184,12 +184,14 @@ 1.42 def __init__(self, *args): 1.43 overloaded constructor 1.44 1.45 - Alignment () - new empty Alignment 1.46 - Alignment ( sequences , body ) - new Alignment with sequences and 1.47 - body initialized from arguments 1.48 - Alignment (fasta_file) - new Alignment , read body and ...

Еще в разделе: (Показать все результаты (>42525) - kodomo.fbb.msu.ru/ )

• allpy: 48dc5974eead lib/project.py
• allpy: allpy/base.py diff
• allpy: 1ce3b0e42ba5

... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

Еще в разделе: (Показать все результаты (>1342) - monkey.belozersky.msu.ru/ )

• About this project
• Inquiry information || Rule of four sequences
• SVETKA, a program for multiple sequence alignments analysus

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

Еще в разделе: (Показать все результаты (>144) - bioinf.fbb.msu.ru/ )

• RNA Alignment
• Input Formats
• SDPlight

AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

Еще в разделе: (Показать все результаты (>167) - www.genebee.msu.ru/ )

• AliComp - GeneBee Alignment Comparison Help
• OUTPUT
• AliComp - GeneBee Alignments Comparison - Advanced

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

Еще в разделе: (Показать все результаты (>6988) - mouse.belozersky.msu.ru/ )

• SVETKA, a program for multiple sequence alignments analysis

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

Еще в разделе: (Показать все результаты (>250) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

Еще в разделе: (Показать все результаты (>32) - mouse.genebee.msu.ru/ )

• Nhunt: program for nucleic acid sequence similarity search
• Nhunt

Scoring Matrices . Matrix Sequences Sequence Consisting of the first four Amino Acids in the Protein GYRB_ECOL: . ... Sequence Achieved by Substitution of the 2nd and 4th Amino Acid and Insertion between the 3d and 4th Amino Acid, in the Protein GYRB_ECOLI, to randomly chosen new amino acids: . ... Matrix Sequences Sequence Consisting of the First Nine Amino Acids of the Protein GYRB_ECOLI: . ... Sequence Consisting of 2nd, 3d, 7th, 8th and 9th Amino Acid Residues of the Protein GYRB_ECOLI: . ...

Еще в разделе: (Показать все результаты (>4273) - kodomo.cmm.msu.ru/ )

• Множественное выравнивание.

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

Еще в разделе: (Показать все результаты (>4132) - lib.mexmat.ru/ )

• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Pevzner P.A. - Computational Molecular Biology An Algorithmic Approach ::

PHYLO_WIN . PHYLO_WIN is a graphic tool for molecular phylogenetic inferences. ... Trees are recovered according to most usual tree-making algorithms including maximum parsimony, maximum likelihood and numerous distance based methods. ... Trees may be drawn, printed, saved into files. Species group, site sets and trees may be saved into the data file for subsequent analyses. ... None . ... User Comments: . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

Еще в разделе: (Показать все результаты (>1770) - www.sai.msu.su/ )

• SAL- Other Scientific Fields - Chemistry, Biology Related - Evalign
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Chemistry, Biology Related - DCSE

... Сайт МГУ . ... Дистанционные олимпиады Факультета иностранных языков и регионоведения Интервью заместителя декана по информационно-образовательным технологиям Назаренко Аллы Леонидовны. фото дня Фоторепортаж с "Дня первокурсника" . ... Центр дистанционного образования МГУ имени М.В.Ломоносова предлагает школьным учителям обучение по следующим программам повышения квалификации: . ... Добавлена информация о дистанционной программе MBA Экономического факультета МГУ . ... и непрерывного образования МГУ,...

Еще в разделе: (Показать все результаты (>3) - www.distance.msu.ru/ )

... Cell border width (pixels). unspecified . ... Column to sort initially ( "1" to number of columns). unspecified . ... Data cell alignment, one value for all columns, or a comma separated list for different alignment of individual columns. ... Data cell background colour of a sorted column; see databg . ... Data cell text colour, a comma separated list. unspecified . ... Header cell alignment, one value for all columns, or a comma separated list for different alignment of individual columns. ...

Еще в разделе: (Показать все результаты (>29556) - dualopt1.cmm.msu.ru/ )

• VarTABLE - TWiki - TWiki
• %TOPICTITLE% ( vs. 1) - TWiki

Изучение статистики наиболее длинной общей подпослеовательности двух случайных подпоследовательностей является одной из самых интересных и трудных задач вычислительной математической биологии. В докладе будут представлены результаты, касающиеся статистического распределения общих подпоследовательностей в упрощенном (некоррелированном) варианте модели, т.наз. модели Бернулли . ...

Еще в разделе: (Показать все результаты (>120) - polly.phys.msu.ru/ )

... О UNИX . ... HelpOnTables . ... Table Markup . ... General table layout and HTML like options . ... Line breaks within cells . ... Bulleted lists and other complex content within cells To create a table, start & end a new line using the table marker; two 'pipe' characters " || ... top left cell || top right cell || || bottom left cell || bottom right cell || ... Just use CSS-formatted styles and it will be inlined in the generated HTML tag. <style="..."> will put that style info into cell (td) html ...

Еще в разделе: (Показать все результаты (>114) - uneex.lorien.cs.msu.su/ )

• WikiCourse/15 Tables - UNИX
• COLUMNS
• COLUMN

... О UNИX . ... HelpOnTables . ... Table Markup . ... General table layout and HTML like options . ... Line breaks within cells . ... Bulleted lists and other complex content within cells To create a table, start & end a new line using the table marker; two 'pipe' characters " || ... top left cell || top right cell || || bottom left cell || bottom right cell || ... Just use CSS-formatted styles and it will be inlined in the generated HTML tag. <style="..."> will put that style info into cell (td) html ...

Еще в разделе: (Показать все результаты (>46) - uneex.mithril.cs.msu.su/ )

• WikiCourse/15 Tables - UNИX

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

Еще в разделе: (Показать все результаты (>225) - xray.sai.msu.ru/ )

• Post main sequence stars (stage II)
• Main-sequence stars (stage I)

Rastorguev А.S. "Astronomical Distances" (Lecture course for postgraduates, 2009-2016) . Part 1. ... Trigonometric parallaxes of stars. Moving clusters distances. ... Photometric distances: general approach. Normal stars as "standard candles". ... Main Sequence fitting or distance scale of star clusters. ... Moving photospheres technique. Cepheid distance scale and P-L relations. RR Lyrae distance scale. ... Globular clusters luminosity function. ...

Еще в разделе: (Показать все результаты (>149) - lnfm1.sai.msu.ru/ )

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

Еще в разделе: (Показать все результаты (>144) - www.parallel.ru/ )

... Another way to fend off and detect impostors is to use call sequence checks. Call sequence checks help you protect against intruders that somehow managed to find out the password you log into your UUCP system with. ... When the attacker call your UUCP feed and steals your mail, this will increase the feeds call sequence number by one. ... If you have enabled call sequence checks, you should check your log files regularly for error messages that hint at possible attacks. ...

Еще в разделе: (Показать все результаты (>109) - itpm.msu.su/ )

• MySQL Reference Manual for version 3.23.10-alpha. - Concept Index

... MATHEMATICAL AND SYSTEM BIOLOGY UDC 577.1 Membrane Profile-Based Probabilistic Method for Predicting Transmembrane Segments via Multiple Protein Sequence Alignment R. A. Sutormina and A. A. Mironova a b , b, c State Research Center GosNIIgenetika, Moscow, 117545 Russia; e-mail: sutor_ra@mail ... Bioinformatics, Moscow State University, Moscow, 119992 Russia Received January 25, 2006 Abstract--Prediction of transmembrane (TM) segments of amino ... Protein Sci. ... Proteins. ...

Еще в разделе: (Показать все результаты (>13) - storage.bioinf.fbb.msu.ru/ )

• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2014.pdf
• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2013.pdf
• http://storage.bioinf.fbb.msu.ru/~mazin/laci.fasta