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81. SDPsite - PF05138
. Home & Submit job . Algorithm & . Format requirements . Contact us . Gallery of examples . This family contains a protein with resolved 3D structure: PAAC_ECOLI/1-248 , pdb ID: 1otk . SDPsite predicts following important positions (numbering corresponds to 1otk ): . SDPs: . CPs: . Best cluster: . Second best cluster: . Mapping predictions onto structure of 1otk : . Associated grouping:
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF05138.html -- 3.4 Кб -- 06.06.2008
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82. SDPsite - PF01722
... This family contains a protein with resolved 3D structure: YRBA_ECOLI/1-75 , pdb ID: 1ny8 . SDPsite predicts following important positions (numbering corresponds to 1ny8 ): . ... 61Y, 22Q, 30G, 6M, 7E, 13S, 23E . ... 68H, 42F, 33F, 44G, 51Q, 58L, 54V, 38V, 69A . ... 61Y, 7E, 22Q, 23E . ... 30G, 33F, 68H, 69A . Mapping predictions onto structure of 1ny8 : . ... BOLA_HAEIN/10-85 . ... BOLA_ECOLI/10-85 . ... YRPM_ACIGB/1-75 . YRBA_ECOLI/1-75 . Y1082_HAEIN/1-75 ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF01722.html -- 4.0 Кб -- 06.06.2008
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83. SDPsite - PF01798
... This family contains a protein with resolved 3D structure: O28191_ARCFU/112-261 , pdb ID: 1nt2 . SDPsite predicts following important positions (numbering corresponds to 1nt2 ): . ... 181S, 228G, 188A . ... 151P, 158G, 170G, 187G, 211G . Best cluster: . 187G, 188A . Second best cluster: . 181S, 211G, 228G . Mapping predictions onto structure of 1nt2 : . ... O28191_ARCFU/112-261 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF01798.html -- 4.2 Кб -- 06.06.2008
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84. SDPsite - PF02579
... This family contains a protein with resolved 3D structure: O27243_METTH/12-106 , pdb ID: 1eo1 . SDPsite predicts following important positions (numbering corresponds to 1eo1 ): . ... Mapping predictions onto structure of 1eo1 : . ... P71530_METMP/12-105 . Q9FA20_ACEDI/34-135 . NIFX_FRAAL/10-104 . Q9Z5Y3_FRASE/10-104 . ... Q92ZL1_RHIME/34-135 . ... Q8KJA1_RHILO/34-135 . ... Q8KL96_RHIET/34-135 . ... Q8PY76_METMA/12-103 . ... Q8KCY1_CHLTE/13-104 . ... O27245_METTH/13-102 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF02579.html -- 6.8 Кб -- 06.06.2008
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85. SDPsite - PF04452
... SDPsite predicts following important positions (numbering corresponds to 1nxz ): . ... Associated grouping: . Group 1 . ... Q6FA41_ACIAD/16-235 . ... Q7P147_CHRVO/16-235 . Q9JW64_NEIMA/16-235 . ... Q87LK2_VIBPA/18-237 . Q8EIK7_SHEON/18-237 . ... Q8ZHG4_YERPE/18-237 . ... YGGJ_ECOLI/18-237 . ... Q6AEC1_LEIXX/18-236 . ... Q8FNF6_COREF/18-236 . Q8NNB5_CORGL/18-236 . ... Q9KD69_BACHD/16-244 . ... Q8DS03_STRMU/14-241 . ... Q9ZIA2_CLOAB/16-241 . ... Q9HUB2_PSEAE/17-235 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF04452.html -- 7.7 Кб -- 06.06.2008
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86. SDPsite - PF05161
... This family contains a protein with resolved 3D structure: Q9X1S1_THEMA/304-410 , pdb ID: 1o0u . SDPsite predicts following important positions (numbering corresponds to 1o0u ): . ... 409N, 398L, 391A, 376G, 349G, 373K, 403P, 394K, 356P, 313T, 374A, 338E, 343V, 318K, 332S, 329L, 336A, 325R, 357T . ... 310G, 311G, 323G, 324G, 351D, 352G, 354D, 355G, 361G, 402G . ... 310G, 311G, 313T, 329L, 332S, 336A, 338E, 361G, 373K, 374A, 376G, 391A, 394K, 398L . ... Associated grouping: . Group 1 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF05161.html -- 4.4 Кб -- 06.06.2008
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87. SDPsite - PF01620
... This family contains a protein with resolved 3D structure: MPAP6_PHLPR/1-132 , pdb ID: 1nlx . SDPsite predicts following important positions (numbering corresponds to 1nlx ): . ... 508F, 471L, 475V, 470N, 511H, 435D, 422-, 422G, 477K, 464T, 401M, 401M, 401M, 401M, 401M, 401M, 401M, 401M, 401M, 422-, 419T, 491A, 460E, 449N . ... 493Y, 457K, 524E, 506E, 486D, 403A, 525V, 502E, 521G, 501P, 509V, 498H, 528V . ... 419T, 435D, 460E, 464T, 470N, 471L, 475V, 486D, 491A, 493Y, 498H, 501P, 502E . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF01620.html -- 4.0 Кб -- 06.06.2008
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88. SDPsite - PF01923
... This family contains a protein with resolved 3D structure: Q9HIA7_THEAC/1-162 , pdb ID: 1nog . SDPsite predicts following important positions (numbering corresponds to 1nog ): . ... 124R, 127R, 34E, 145Y, 116H, 40G, 154F, 157A, 4R, 29Q, 125L, 118A, 2F, 108G, 104V, 18R, 63F, 106P, 87E, 1M, 67E, 97I, 161N, 102L, 107G, 14A, 158L . ... 147N, 33D, 103F, 21K, 123R, 126E, 148R, 154F, 30G, 116H . ... 106P, 107G, 108G, 157A, 158L, 161N . ... O34899_BACSU/3-169 . ... Q9AA77_CAUCR/7-178 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF01923.html -- 5.2 Кб -- 06.06.2008
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89. SDPsite - PF02502
... This family contains a protein with resolved 3D structure: RPIB_ECOLI/62-142 , pdb ID: 1nn4 . SDPsite predicts following important positions (numbering corresponds to 1nn4 ): . ... 133R, 134H, 99H, 137R, 130E, 63I, 107F, 102T, 78K, 141I, 106A, 98Q, 125L, 115E, 97R, 64L, 82I . ... 69G, 71G, 66C, 62G, 77N, 81G, 93A, 120I, 124W . ... 62G, 63I, 64L, 77N, 78K, 81G, 82I, 93A, 97R, 98Q, 99H, 102T, 106A, 107F, 120I, 124W, 125L, 130E, 133R, 134H, 137R, 141I . ... LACB_STRMU/61-142 . LACB_LACLA/61-142 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF02502.html -- 4.2 Кб -- 06.06.2008
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90. SDPsite - PF03652
... This family contains a protein with resolved 3D structure: RUVX_ECOLI/3-136 , pdb ID: 1nmn . ... 8F, 70Q, 20G, 73T, 42W, 112G, 54P, 28R, 81N, 24T, 10F, 59V, 113Y, 133Y, 64N, 72L, 136Q, 104R, 41D, 35A, 110Q, 19V, 36Q, 101V, 38G, 131E, 23I, 120K, 91V, 111G, 116L . ... 9D, 16G, 95D, 11G, 122D, 96E, 62P, 18A, 126A, 79F, 60G, 130L, 15I . ... 8F, 91V, 10F, 112G, 15I, 16G, 18A, 19V, 20G, 28R, 35A, 36Q, 38G, 41D, 42W, 59V, 60G, 62P, 70Q, 72L, 73T, 79F, 81N, 91V, 95D, 96E, 122D, 126A, 130L, 131E, 133Y . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF03652.html -- 4.4 Кб -- 06.06.2008
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91. SDPsite - PF04076
... This family contains a protein with resolved 3D structure: YGIW_ECOLI/2-127 , pdb ID: 1nnx . SDPsite predicts following important positions (numbering corresponds to 1nnx ): . ... 52K, 58T, 75Y, 85N, 45V, 49E, 71S . ... 64G, 77F, 79D, 108G, 75Y, 56D, 82G, 73D, 2K, 40G . ... 45V, 49E, 56D, 58T, 64G, 73D, 77F, 79D, 82G . ... 71S, 75Y, 85N . Mapping predictions onto structure of 1nnx : . ... Q9KLL1_VIBCH/1-130 . ... YDEI_ECOLI/1-130 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF04076.html -- 3.8 Кб -- 06.06.2008
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92. SDPsite - PF01171
... This family contains a protein with resolved 3D structure: MESJ_ECOLI/14-215 , pdb ID: 1ni5 . SDPsite predicts following important positions (numbering corresponds to 1ni5 ): . ... 60W, 127A, 96A, 175I, 51H, 53L, 23L, 100A . ... 154P, 115Q, 22G, 24D, 119D, 177D, 98Y, 180N, 21G, 97R, 51H, 94R, 153R, 191R . ... 21G, 22G, 23L, 24D, 94R, 96A, 97R, 98Y, 115Q, 153R, 154P . ... 51H, 53L, 60W, 175I, 177D . Mapping predictions onto structure of 1ni5 : . Associated grouping: . Group 1 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF01171.html -- 4.9 Кб -- 06.06.2008
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93. SDPsite - PF02381
... This family contains a protein with resolved 3D structure: MRAZ_MYCPN/1-71 , pdb ID: 1n0e . SDPsite predicts following important positions (numbering corresponds to 1n0e ): . ... 43L, 38K, 69K, 90T, 50F, 56V, 76Y, 94K, 65L, 44P, 73F, 57I, 32N, 32N, 32N . ... 36D, 73F, 40R, 39N, 44P . ... 36D, 38K, 39N, 40R, 43L, 44P, 56V, 57I . ... 50F, 69K, 73F, 76Y . Mapping predictions onto structure of 1n0e : . ... MRAZ_MYCTU/72-142 . MRAZ_MYCLE/72-142 . MRAZ_BACSU/72-142 . MRAZ_ENTHR/72-142 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF02381.html -- 4.3 Кб -- 06.06.2008
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94. SDPsite - PF02492
... This family contains a protein with resolved 3D structure: YJIA_ECOLI/5-184 , pdb ID: 1nij . SDPsite predicts following important positions (numbering corresponds to 1nij ): . ... 99T, 13L, 12F, 148Q, 103D, 64C, 67C, 8L, 102A, 145A, 73L, 146Q, 107I, 98C, 122L, 62N, 140N, 10T, 143T, 41G, 76A, 38N, 106P, 131D, 49L, 123L, 101M, 7T, 65I, 45V . ... 103D, 12F, 13L, 98C, 99T, 101M, 102A, 103D, 106P, 107I, 145A, 146Q, 148Q . ... 73L, 8L, 122L, 123L . ... Associated grouping: . Group 1 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF02492.html -- 6.0 Кб -- 06.06.2008
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95. SDPsite - PF02637
... This family contains a protein with resolved 3D structure: YQEY_BACSU/6-147 , pdb ID: 1ng6 . SDPsite predicts following important positions (numbering corresponds to 1ng6 ): . ... Mapping predictions onto structure of 1ng6 : . ... Q72RP2_LEPIC/6-147 . ... Q7MQQ1_WOLSU/7-147 . Q9PHU3_CAMJE/6-146 . Q9WZF4_THEMA/6-146 . ... Q6MR59_BDEBA/6-147 . ... Q72B47_DESVH/6-146 . ... Q8RB58_THETN/6-146 . ... GATB_AQUAE/328-475 . ... GATB_THETN/326-473 . ... GATB_LACLA/327-474 . ... GATB_CHLPN/336-485 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF02637.html -- 9.0 Кб -- 06.06.2008
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96. SDPsite - PF03320
... This family contains a protein with resolved 3D structure: GLPX_ECOLI/2-322 , pdb ID: 1ni9 . ... 183A, 305T, 307L, 135L, 192S, 164K, 294I, 185P, 95M, 169A, 206Y, 139L, 28D, 199D, 227D, 274R, 60I, 175Q, 258A, 310G, 92M, 151G, 320S, 194L, 44L, 269L, 154L, 177L, 137L . ... 322H, 64P, 86P, 119Y, 212P, 23W, 25G, 27G, 33D, 56G, 58G, 61D, 69G, 73G, 85D, 89G, 96G, 134D, 142N, 178G, 186D, 187G, 188D, 209G, 214G, 226G, 260G, 280F, 284G, 288G . ... 134D, 135L, 137L, 139L, 142N, 154L, 175Q, 177L, 178G . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF03320.html -- 4.1 Кб -- 06.06.2008
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97. SDPsite - PF07683
... This family contains a protein with resolved 3D structure: YJIA_ECOLI/224-317 , pdb ID: 1nij . SDPsite predicts following important positions (numbering corresponds to 1nij ): . ... 275G, 277Q, 271L, 295S, 267E, 276V, 229V, 258Y . ... 229V, 260G, 267E, 271L, 295S . Mapping predictions onto structure of 1nij : . Associated grouping: . Group 1 . ... Q8EL03_OCEIH/260-375 . Q8CQR9_STAEP/260-375 . ... Q9HT39_PSEAE/256-373 . ... Q92L97_RHIME/228-322 . ... Q8CQ26_STAEP/220-306 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF07683.html -- 8.1 Кб -- 06.06.2008
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98. SDPsite - PF00582
... SDPsite predicts following important positions (numbering corresponds to 1mjh ): . ... Associated grouping: . Group 1 . ... Q9LU98_ARATH/1-148 . ... Q9ZPQ9_ARATH/1-143 . ... Q97B14_THEVO/1-143 . USPA_SALTI/1-137 . ... Q8XZA0_RALSO/1-146 . ... P72700_SYNY3/1-132 . ... YXIE_BACSU/1-148 . ... Q9JYN4_NEIMB/1-148 . ... Q8YWL5_ANASP/1-139 . ... Q9HHV8_HALN1/1-139 . ... Q9KFR2_BACHD/1-137 . Q99TF7_STAAM/1-137 . ... Q8YDD2_BRUME/1-148 . Q8Y2Z7_RALSO/1-146 . ... Q8NQQ6_CORGL/4-144 . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF00582.html -- 13.3 Кб -- 06.06.2008
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99. SDPsite - PF01791
... This family contains a protein with resolved 3D structure: DEOC_AQUAE/3-199 , pdb ID: 1mzh . SDPsite predicts following important positions (numbering corresponds to 1mzh ): . ... 225E, 186E, 162F, 253T, 285R, 172K, 111A, 163P, 190V, 188D, 221K, 197K, 226T, 161G, 141P, 159V, 222V, 224V, 229L, 204V, 107Y, 175E . ... 109D, 282G, 250K, 259G, 247D, 183G . ... 159V, 161G, 162F, 163P, 172K, 175E, 188D, 190V, 221K, 222V, 224V, 225E, 226T, 253T . ... 107Y, 109D, 111A, 186E . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF01791.html -- 4.5 Кб -- 06.06.2008
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100. SDPsite - PF02657
... This family contains a protein with resolved 3D structure: SUFE_ECOLI/10-135 , pdb ID: 1mzg . SDPsite predicts following important positions (numbering corresponds to 1mzg ): . ... 35P, 130I, 56W, 84V, 20W, 123L, 22E, 39D, 125A, 21E, 37L, 15L, 47S, 68E, 102V, 100F, 90D, 34L, 34L, 34L, 34L, 23K, 28I, 28I, 25L, 25L, 25L, 25L . ... 51C, 80G, 122G, 119R, 24Y, 14F, 56W, 50G, 69L, 106F, 48I . ... 34L, 35P, 37L, 47S, 48I, 50G, 51C, 56W, 68E, 69L, 80G, 84V, 119R, 122G, 123L, 125A, 130I . ...
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Ссылки http://bioinf.fbb.msu.ru/SDPsite/examples/PF02657.html -- 4.1 Кб -- 06.06.2008
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