... 5DPK structure . Page of complex: 5DPK . Home Browse Download Help About Us . ... PDB ID . ... MUTY ADENINE GLYCOSYLASE BOUND TO A TRANSITION STATE ANALOG (1N) PAIRED WITH D(8-OXOG) IN DUPLEXED DNA TO 2.2 A . ... View in . ... Protein chains: . DNA chains: . ... 5dpk.pdb1.pdb . ... Pfam domains . ... Download file with secondary structure created by Stride . 5dpk.pdb1.pdb: [ download sequences in FASTA format ] . ... Click "SHOW" for view sequence . ... NPIDB team 2003 - 2016 . ...
Home . Interaction classes . Classes of protein-DNA interaction of SCOP families . Home Browse Download Help About Us . ... Pfam families . SCOP families . ... Interaction modes . ... Mj = major groove . Mn = minor groove . ... Interaction class . Number of families . Number of structures . Number of domains . ... 121 . ... 127 . ... NPIDB team 2003 - 2016 . ...
... Interaction classes . ... List of Contact Types: . ... Contact with Major Groove of DNA by helices, loops and Minor Groove by any element(s) . ... Contact with Major Groove of DNA by strands, loops and Minor Groove by any element(s) . ... Contact with Major Groove of DNA by loops and Minor Groove by any element(s) . ... Contact with Major Groove of DNA by any element(s) and Minor Groove by helices, loops . ... Contact with Major Groove of DNA by any element(s) and Minor Groove by loops . ...
. # . Home . Services . Services for analysing DNA/RNA-protein complexes . Home Browse Download Help About Us . List of complexes . Pfam families . SCOP families . Interaction classes . Interaction modes . GO terms . Under construction . NPIDB team 2003 - 2016 . text .
... Download . ... List of complexes . Pfam families . SCOP families . ... Download lists of data: . ... List of SCOP domains: . List of Pfam domains: . ... Pfam domains: . SCOP domains: . Download sets of representatives in PDB format: . Best representatives of Pfam domains: . Best representatives of SCOP domains: . Download calculated data: . Lists of Hbonds (txt, xml) . ... All collection is available at http://npidb.belozersky.msu.ru/data/pdb_new/ . ...
... List of complexes . ... NPIDB, Nucleic acid ? Protein Interaction DataBase provides an access to structured and organized information about all available structures of DNA ? ... Since 2003, the database is available online. ... NPIDB: nucleic acid?protein interaction database . ... An updated version of NPIDB includes new classifications of DNA-protein complexes and their families . ... Sergey Vasilyev (the main developer of the first version of the database) . ... 03-04-48476 (2003 2005) . ...
. # . Home . Help . Help page . Home Browse Download Help About Us . List of complexes . Pfam families . SCOP families . Interaction classes . Interaction modes . GO terms . Under construction . Main page . List of complexes . Page of a complex . List of Pfam families . Page of a Pfam family . Blocks-3D . List of SCOP families . Page of a SCOP family . Conserved water . Interaction classes . Services . Nucleic acid тАУ protein interaction . NPIDB team 2003 - 2016 . text .
... Pfam families . ... List of Pfam domains: . ... List of Pfam families detected in NPIDB entries: . ... RNA binding protein B2 . ... Bunyavirus RNA dependent RNA polymerase . ... Mitochondrial ribosomal death-associated protein 3 . ... DNA polymerase family A . ... DNA polymerase family B, exonuclease domain . ... E2F/DP family winged-helix DNA-binding domain . ... Nucleolar RNA-binding protein, Nop10p family . ... RNA polymerase recycling family C-terminal . ... Ribosomal protein L1p/L10e family . ...
Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...