SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins . The Pfam plain text format is one of the formats, in which aligned sequences from the Pfam database can be retrieved. For the correct work of SDPpred gaps are required to be indicated by dashes and all letters indicating amino acids are required to be in upper case. ... TIPA_PHAVU/13-234 EATHPDS--MRASLAEFASTFIFVFAGEG--SGLALVKIYQ- . ... back to input format rules . ...

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• About this project
• Inquiry information || Distances

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• x264 codec improvement | Лаборатория компьютерной графики и мультимедиа

Next: Other parameters of the Up: The Model Previous: Initial binary parameters . As we only deal with initially massive binary systems (their primary's mass is higher than 10 ), which are capable of evolving off the main sequence during less than years, the compact stars left behind stellar evolution are (in the case of the most massive stars) NSs and BHs. ... For a NS belonging to a binary, the evolution complicates as the secondary star evolves: for example, (recycling), etc. ...

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• Dependence on the Scenario Parameters and Initial Distributions

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• OUTPUT
• Screening of pattern or alignment against PROTEIN databank

... The results will be also sent to you via E-MAIL to address: sherlock1991@rambler.ru . ... BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA ...

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• Result summary blast-20091031-1941229237
• Genebee DotHelix Motifs' Collection Map

Estimation of translational importance of mammalian mRNA nucleotide sequence characteristics based on ribosomal profiling data O.A. Volkova1,*, Y.V. Kondrakhin2,3, R.N. Sharipov 1 2,3,4 Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia 2 Design ... Novosibirsk, Russia 4 Novosibirsk State University, Novosibirsk, Russia *ov@bionet.nsc.ru Keywords: ribosome profiling, RiboSeq, 5'UTR , mRNA , ... Until recent time there were no experimental data on the translation efficiency. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/33.pdf

... Recommended values . Start word length . Start length of motiff for Multiple sequence alignment. ... Max N Mismatches . ... Min score . ... Gap parameter . This parameter defines gap scoring. the grater this value is the stronger gap will be panalysed . ... If inforation content of a column is less than given value the column should be not included into alignment. the grater this value is the stronger gap will be panalysed . ... Max loop . Max energy of a helix . ... cgcatagctc cacca . ...

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• SDPlight
• SDPsite - Algorithm Format requirements
• SDPpred

... unknown) sesam_fetch_row -- Fetch one row as an array . array sesam_fetch_row ( string result_id [, int whence [, int offset]]) . ... seek to absolute row number given as offset (Zero-based. ... ORDER BY FIRSTNAME", 1); if (!$result) { ... error ... } // print the table in backward order print "<TABLE BORDER>\n"; $row = sesam_fetch_row ($result, SESAM_SEEK_LAST); while (is_array ($row)) { print " <TR>\n"; for ($col = 0; $col < $row["count"]; ++$col) { print " <TD>".htmlspecialchars ($row[$col])." ...

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• udm_set_agent_param
• udm_get_res_param
• xslt_process

Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... Line: 1 to 1 . ... Changed: . ... It should correspond to the format of the format parameter. ... Topic:* | ... FAQ\:[\n\r]*([^\n\r]+).*) [[$topic][Answer.. ... SEARCH{ "\.*" scope="topic" regex="on" nosearch="on" nototal="on" order="modified" reverse="on" format="| [[$topic]] | ... SEARCH{ "\.*" scope="topic" type="regex" nosearch="on" nototal="on" order="modified" reverse="on" format="| [[$topic]] | ...

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• IncludeTopicsAndWebPages - TWiki - TWiki - (printable)
• %TOPICTITLE% (18 vs. 19) - TWiki
• IncludeTopicsAndWebPages - TWiki - TWiki

... The operators will be explained as they are used. The general notion to keep in mind is that any combination of these operators results in a 2- D affine coordinate transformation in the TF plane, which may be represented using the homogeneous coordinates often used in computer graphicsfoley. ... S _t_c,f_c = g_t_c,f_c,(_t) | ... We denote a time shift to the position , with an operator that has a multiplicative law of composition : (Table 1). ... Note that these two operators do not commute. ...

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• Tutorial on Fortran 90, Digital UNIX
• CONCLUSION

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus

... This program was created for correlating chosen regions in the series of fts images. ... Chosen regions' . ... In this section the program counts the integral for each region of the grid for each image. ... As a matter of fact, the integral is total brightness of the region and it is counted by 'int_tabulated' IDL function. ... In addition, the program will show the count of the regions which correlate with the corresponding region (the brighter region means the bigger count) and its contour. ...

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Электронная библиотека Попечительского совета . ... Moeller T.B. - Magnetic Resonance Imaging, Parameters and Positioning . ... Название: Magnetic Resonance Imaging, Parameters and Positioning . Автор: Moeller T.B. Аннотация: . Magnetic resonance imaging is a modality that is carried out under highly standardized conditions. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Sheffer A., Praun E., Rose K. - Mesh Parameterization Methods and Their
• Korf I., Yandell M., Bedell J. - Blast (Basic Local Alignment Search Tool) ::

Encode character sequences in "string" , by mapping characters (or sequences of characters) to an alternative character (or sequence of characters). ... String to encode . ... Parameter type not be used if old or new are given. old="tokenlist" . Comma-separated list of tokens to replace. ... Example: %SEARCH{ "%ENCODE{ "string with "quotes"" type="quotes" }%" noheader="on" }% When using old and new , be aware that the results of applying earlier tokens are not processed again using later tokens. ...

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You are here: Foswiki > System Web > Macros > VarENCODE (31 Oct 2010, ProjectContributor ) E dit A ttach . Encode character sequences in "string" , by mapping characters (or sequences of characters) to an alternative character (or sequence of characters). ... comma-separated list of replacement tokens. The elements in this list match 1:1 with the elements in the old list. ... An empty element in the new list will result in the corresponding token in the old list being deleted from the string. ...

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• VarQUERYPARAMS < System < Foswiki
• (backlinks in System Web) FormatTokens < System < Foswiki
• (backlinks in all Webs) FormatTokens < System < Foswiki

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• NPG-explorer

... allpy/structure.py . ... 1.1 --- a/ allpy /structure.py Tue Feb 22 19:12:36 2011 +0300 1.2 +++ b/ allpy /structure.py Tue Feb 22 19:18:03 2011 +0300 1.3 @@ -248,12 +248,19 @@ 1.4 * timeout_2 -- Bron-Kerbosh timeout (blocks) 1.5 * min_width -- min width of each core 1.6 1.7 + result = [] 1.8 Block = self .__class__ 1.9 # for sorting 1.10 - key_ column = lambda c: return self .columns.index(c) 1.11 - key_sequence = lambda s: return ...

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• allpy: e4b269ba4f5f lib/project.py
• allpy: a6d287f9c901 lib/block.py
• allpy: lib/block.py annotate

... Method Detail protected final void init ( ConcreteIndexMap.ZZMap iMap, ConcreteIndexMap.ZZMap lengthsMap) . ... iMap - ZZMap defining the forward transform. protected final void link ( ConcreteIndexMap prev, ConcreteIndexMap.ZZMap iMap, ConcreteIndexMap.ZZMap lengthsMap) . ... prev - ConcreteIndexMap this is composed with. iMap - ZZMap defining the forward transform. lengthsMap - ZZMap defining the reverse transform. protected final void link ( ConcreteIndexMap prev, ConcreteIndexMap.ZZMap iMap) . ...

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• : Class AbstractAccessor

... Working technology became a part of instruction for geophysical work in this region, prepared in the institute UkrVNIMI. ... The winter researches on the site Volodarskoje (Moscow region), polluted by a thick layer (up to 3 m) of chicken dropping . ... The field studies at Moscow oil refining factory in Kapotnja. ... Geophysical studies around oil refining factories in Samara region with a purpose of estimattion of oil pollution and search for hydrocarbons' secondary deposits . ...

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• Anis. Page2

... Arrays are handled somewhat awkwardly in CORBA. ... If the array element is a string or an object reference, then the mapping uses the same type as for structure members. ... Besides the Array_forany mapping the CORBA standard also describes a mapping for an array slice . ... Output parameters and results are handled via pointers to array slices. ... SS_slice* bar( const SS ss1, SS ss2, SS_slice*& ss3, long_arr arr ) { //... ss3 = SS_alloc(); SS_slice *res = SS_alloc(); return res; }; }; . ...

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• Qt Toolkit - QKeyEvent Class
• A C++ Client
• Unions