... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite - PF07978
• SDPsite - PF01399
• SDPsite - PF01205

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank

Bioinf ormatic analysis of diverse protein superf amilies to design improved enzymes Dmitry Suplatov , Nikolay Panin, Tatyana Shcherbakova, Ilyas Khaliullin, Vytas Svedas Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and F aculty of Bioengineering and Bioinformatics ... D. Suplatov, E. Kirilin, V. Takhaveev, V. Svedas (2014) Zebra: web-server for bioinformatic analysis of diverse protein families, J.Biomol.Struct.Dyn., ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/217.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf

Some additional inquiry information . ... WPGMA . As any cluster method , UPGMA (unweighted pair-group method of analysis) performs the structure of a set of some homogeneous elements ( in our case alignment is a set of amino acid sequences ). ... Firstly, when we calculate correlations between distance matrices on the whole alignment and on separate position (for selecting "diagnostic" positions) - we should be sure that these data are not distorted by multiple repeating of one sequence. ...

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• SDP home page
• SDPpred
• Homeodomain numeration assumed

... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first ... 22 * self.positions -- sorted list of positions of the project.alignment that . ...

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• allpy: 27e866560087 test/usecase2.py
• allpy: 45573ee48844
• allpy: e0f503388c0e test/usecase2.py

Projects . ... Modeling the tmRNA structure in the ribosome . For modeling of the tmRNA-2 structure in the ribosome we used the published ribosome X-ray structure with a defined mRNA path (Yusupova et al, 2006). ... Since the arch consisting of tmRNA pseudoknots and helices was observed by cryo-EM in the pre-initiation complex (Valle et al, 2003) as well as in the tmRNA-4 complex described here, we suggest that such a structure should be present at all steps of the tmRNA path through the ribosome. ...

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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Dynamic HTML in Communicator
• Not so well documented Device Helpers in OS/2

Описание вакансии: . ... The project will focus on the structure-property/toxicity studies of different nanomaterials. ... Experience: The background in theoretical QSAR/QSPR and computational chemistry studies is essential. ... следующая вакансия . список всех вакансий . добавить вакансию . редактировать эту вакансию . ...

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• "Phd student position in chemical biology and molecular imaging" - вакансия в

Электронная библиотека . ... Главная Ex Libris Книги Журналы Статьи Серии Каталог Wanted Загрузка ХудЛит Справка Поиск по индексам Поиск . ... Поиск по указателям . Результат поиска . Книга . Страницы для поиска . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Panasenko G.P. - Multiscale Modelling for Structures and Composites ::
• Peters C.A., Steenbrink J.H. - Mixed Hodge Structures :: Электронная библиотека
• Tomassini M. - Spatially Structured Evolutionary Algorithms: Artificial

MAKING THE PROFILES . First of all you are expected to load a FITS file ("FILE"-"LOAD"). ... By pressing the middle button you copy the profile from the first profile window to the second one. ... An example: first integral can correspond to the profile of active region and second integral can correspond to the profile of quiet chromospheric region. ... The second profile (which is subtracted from the first one) you extract after clicking on "SUBTRACT"-"MARK QUIET PROFILE" and marking the region. ...

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• Data bases of Natural Satellites. Documentation. Structure
• Data base of Natural Satellites. Documentation. Structure

Routing on lattice-cellular structures" . Ryabov G.G. An extension of the class of lattice graphs is considered. In order to become close to the Euclidean metric, inclusion of additional ribs with weights equal to the corresponding lengths of vectors in the Euclidean space is performed in a neighborhood on the lattice. ... An algorithm for constructing a set of the shortest paths on such a lattice is proposed. ... PostScript (in Russian) (6.04MB) . PDF (in Russian) (710KB) . ...

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• "Nonuniqueness of shockwave structures in real gases: the Mach and/or regular
• A variable structure algorithm using the (3,2)-scheme and the Fehlberg method
• Composition of infinitary structures

Thermodynamic and electric properties of glasses were intensively investigated during the last decades. An important result of this research was the discovery of several universal properties that are only weakly dependent on the special structure of the amorphous solid. These `anomalous' properties are normally unknown for crystals. ... Secondly, a mesoscopic model will be presented which allows the description of anomalous transport effects in glasses at and below the glass transition point. ...

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• Научный семинар
• Science

... Полная версия этой страницы: PhD position in molecular dynamics, nanoscience, USA . Студенческий форум Физфака МГУ > Физфак и учеба > Аспирантура . ... Applications are invited for PhD studies focused on theoretical and computational design and modeling of novel (hybrid) nanoscale systems, operated by . ... The candidates will learn how to use ab-initio electronic structure and quantum transport methods, molecular dynamics simulations, . ...

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• Студенческий форум Физфака МГУ > PhD positions in Switzerland
• Студенческий форум Физфака МГУ > Theoretical PhD studies, PhD positions for
• Theoretical PhD studies, PhD positions for Fall 2010 - Студенческий форум

The CompHEP symbolic output can be used for further manipulation with an answer which has been obtained by means of the built-in symbolic calculator. It might be a summation of all diagrams to a common denominator expression, a symbolic integration of answer, a representation of answer as a function of special set of variables and so on. ... As it was mentioned above (Section ) the result obtained by summation of all diagrams must be symmetrized in the case of identical outgoing particles. ...

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• Getting started with LanHEP
• CA Seminar, 21 February, 2001
• Menu 3.

... Taxes and Taxpayers in Russia in the beginning of the 20th century, . ... Ezhegodnik (Economic Hystory. ... The article considers the Russian prewar tax system as an essential part of the government's general economic policy as well as an important factor of economic growth. ... In the beginning of the 20th century commercial and industrial taxes (tax on trade) amounted to half of the total of direct taxes, collected in Russia, in comparison with 20% at the end of the 19th century. ...

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• "Novaya i noveishaia istoria" Journal

... Menzerath's Law for Morphemic Structures of Words: . A Hypothesis for the Evolutionary Mechanism of its Arising and its Testing . Anatoliy A. Polikarpov . ... Key words: Menzerath's Law, morphemic structures, language evolution . ... In this paper there is present (1) a hypothesis for understanding the evolutionary mechanism responsible for the Law arising and (2) some data for testing the hypothesis. ... A Hypothesis. ... Altmann, G. Prolegomena to Menzerath's Law//Glottmetrika 2. ...

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• МГУ - ЛОКЛЛ:: Закон Менцерата
• MSU-LGCLL:: Krylov J.K. - On the Nature of Koehler's Effect

... The real structure (dislocation density, inclusions, segregations, character of distribution of components) was studied in PbTe crystals doped with Cr, Co, Ni, and In. The relation between the real structure of crystals and the features of the T-x phase diagrams of the corresponding systems, doping level, and the rates of growth and cooling was established. ... Tiller criterion was used to calculate the concentration range of stability of a crystallization surface during the crystal growth. ...

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• The Molecular Structure of 2-Chloroacrolein Studied by Gas Electron
• Structure of the Chemistry Department of Moscow State University
• Moscow University Chemistry Bulletin Vol. 53, No. 2, P. 81 (2012)

... The results will be also sent to you via E-MAIL to address: sherlock1991@rambler.ru . ... BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA ...

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• Structure Alignment
• game.py in tanchiki тАУ Tanchiki
• WikiHtml тАУ Tanchiki