... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... HELP ON SCREENING OF PATTERN OR ALIGNMENT AGAINST PROTEIN PROTEIN . ... The method of looking for all pattern entries (possibly inexact) in PROTEIN databank is almost the same as in PROSITE screening procedure. ... The screening by query alignment, based on the same principle: the alignment is seen as a pattern defining letter's frequencies in every position. The pattern example: . ... the only one capital letter at a position means that only given residue should be at the position. ...

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... Numeration assumed . For this study 36 PDB-entries containing coordinates of Homeodomains were used. ... Yes . ... Drosophila melanogaster . ... X-RAY . ... MAT a 1 . ... 182 . ... 151 . ... X-ray . ... According to the gaps present in the alignment, all chains were renumbered so that after each gap the numeration begins from a new number. Thus, all aligned residues of different structures go under the same number and the gaps in the alignment do not put the numeration out. ...

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• ETS_3D_conservation
• Inquiry information || Parsimony algorithm
• SDP home page

... This guide discusses the concept and use of Dynamic HTML, which includes style sheets, content positioning, and downloadable fonts. ... This document discusses each of the three components of Dynamic HTML, describes how to use them, and gives examples of the use of each one. ... Positioning HTML Content contains the following chapters: Chapter 7, "Introduction," introduces the concept of positioning HTML content and discusses the two kinds of syntax you can use to create positioned blocks of content...

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• Heliophysics, Internal structure and seismology
• Long description for example illustrating positioning with respect to a
• Long description for example illustrating absolute positioning

... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first ... 22 * self.positions -- sorted list of positions of the project.alignment that . ...

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• allpy: d9e971fa4699
• allpy: 45573ee48844
• allpy: lib/block.py annotate

The database of RNA secondary structure elements E.F. Baulin, Institute of Mathematical Problems in Biology, Pushchino, Russia, Higher Schoo l of Economics, Moscow, Russia ... Russia, Higher Schoo l of Economics, Moscow, Russia, mroytberg@lpm.org.ru We propose a new definition of the loop, which on the one hand is a generalization of the definition of Mathews-Turner [1], and on the other hand allows to divide into loops an arbitrary secondary ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/172.pdf

... Most HTML elements are identified in a document as a start tag, which gives the element name and attributes, followed by the content, followed by the end tag. ... To identify the document as being HTML 3.0, it is recommended that documents start with the prologue: <!doctype HTML public "-//W3O//DTD W3 HTML 3.0//EN"> . ... HTML 3.0 documents formally have the following structure: <HTML> <HEAD> head elements .. ... HTML> . ... The permitted syntax of HTML 3.0 compliant documents is specified by the...

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• Sorting on a specific part of a field
• Horizontal Tabs
• The Body Element and Related Elements

... One shmid data structure for each shared memory segment in the system. */ struct shmid_ds { struct ipc_perm shm_perm; /* operation perms */ int shm_segsz; /* size of segment (bytes) */ time _t shm_atime; /* last attach time */ time _t shm_dtime; /* last detach time */ time _t shm_ctime; /* last change time */ unsigned short shm_cpid; /* pid of creator */ unsigned short shm_lpid; /* ... Time the last process attached the segment. shm_dtime . ...

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• Kernel semid_ds structure
• Kernel msqid_ds structure
• Kernel msg structure

Электронная библиотека Попечительского совета . ... Bao-Yen Tsui J. - Fundamentals of Global Positioning System Receivers: A Software Approach . ... Название: Fundamentals of Global Positioning System Receivers: A Software Approach . Автор: Bao-Yen Tsui J. Аннотация: . ... The Second Edition of this acclaimed publication enables readers to understand and apply the complex operation principles of global positioning system (GPS) receivers. ... GPS receiver related subjects . ...

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• Strategy = structure :: Электронная библиотека попечительского совета мехмата
• Поиск книг, содержащих General position :: Электронная библиотека
• Peters C.A., Steenbrink J.H. - Mixed Hodge Structures :: Электронная библиотека

Описание вакансии: . ... The project will focus on the structure-property/toxicity studies of different nanomaterials. ... Experience: The background in theoretical QSAR/QSPR and computational chemistry studies is essential. ... следующая вакансия . список всех вакансий . добавить вакансию . редактировать эту вакансию . ...

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Modules | ... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Developer Documentation . ... The new structure is a great deal simpler... module MODULE_VAR_EXPORT module_name _module = { STANDARD20_MODULE_STUFF, /* create per-directory config structures */ /* merge per-directory config structures */ /* create per-server config structures */ /* merge per-server config structures */ /* command handlers */ /* handlers */ /* register hooks */ }; . ...

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• Why Are They Needed?
• Platform-Dependent Conditionals
• Apache 2.0 Hook Functions - Apache HTTP Server

The user phase space function has a prototype . double usrfun(char * name) . ... is called for the user input of the structure function parameters just after the particular structure function is chosen. ... In the simplest case, if the user would like to implement a new structure function without singularity and extra parameters, he may take a copy of the $COMPHEP/c_source/num/strfun/sf_prv.c file, improve p_prv so that it returns in any case, and rewrite the originally trivial c_prv function. ...

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• General structure
• [Comphep-common] Events to produce of LHAEF format
• Fortran case

... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Sequence Name . ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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DVM-system of parallel program development . Goals and structure . ... 2.1 C-DVM and Fortran DVM parallel program development . ... Using C-DVM and Fortran-DVM languages a programmer deals with the only version of the program both for sequential and parallel execution. ... These rules are syntactically organized in such a manner that they are "transparent" for standard C and Fortran compilers and doesn't prevent DVM-program execution and debugging on workstations as usual sequential program. ...

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• Fortran DVM compiler. Detailed design

Microsymposium 38, MS015, 2003 (letter format) MARS: MOVEMENT OF GEOGRAPHICAL POLES AND DEFORMATION OF ITS SURFACE. ... The global analysis of the Earth linear structure elements has allowed to define the position of geographical poles in the different geochronological periods [3, 4]. ... It is the curves that unite sequences of geographical poles - poles of symmetry of faults in the global stress field fixed by faults on a surface of the mantle during its rotation around of the core. ...

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• Шевченко Владислав Владимирович

... Menzerath's Law for Morphemic Structures of Words: . A Hypothesis for the Evolutionary Mechanism of its Arising and its Testing . Anatoliy A. Polikarpov . ... Key words: Menzerath's Law, morphemic structures, language evolution . ... In this paper there is present (1) a hypothesis for understanding the evolutionary mechanism responsible for the Law arising and (2) some data for testing the hypothesis. ... A Hypothesis. ... Altmann, G. Prolegomena to Menzerath's Law//Glottmetrika 2. ...

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• МГУ - ЛОКЛЛ:: Закон Менцерата
• Footnotes

COMPUTER DESIGN OF HETEROCYCLIC RING-OPENING REACTIONS. ... Since the cleavage of ring bond requires appearance of new bond either between th e (endo) atoms of initial cycle, or between initial cycle and external (exo) group, the first case is treated as endoopening, and the another as exo-opening: Endo-Ring Opening Exo-Ring Opening © 1995 American Institute of Physics 75 7 758 Heterocyclic Ring-Opening Reactions General Methodology and Algorithms 1. ... RULE FOR ENDO-TYPE RJNG OPENING. ...

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• http://www.chem.msu.ru/eng/misc/babaev/papers/042e.pdf
• http://www.chem.msu.ru/eng/misc/babaev/papers/091e.pdf
• http://www.chem.msu.ru/eng/misc/babaev/papers/040e.pdf

The Qt API consists the following modules: . Application Classes . ... Widgets . ... Dialogs . ... Classes handling automatic resizing and moving of widgets . Abstract Widgets . Abstract widget classes available for subclassing. ... Classes providing drawing primitives . ... Classes related to the handling of text fonts . ... Classes providing OS-independent I/O and file and directory handling. ... Time And Date Handling . OS-independent Classes for handling date and time. ...

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• Modules
• Using the CG-editor
• The Coordinate System