... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• Site Cluster

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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Some additional inquiry information . ... WPGMA . As any cluster method , UPGMA (unweighted pair-group method of analysis) performs the structure of a set of some homogeneous elements ( in our case alignment is a set of amino acid sequences ). ... Firstly, when we calculate correlations between distance matrices on the whole alignment and on separate position (for selecting "diagnostic" positions) - we should be sure that these data are not distorted by multiple repeating of one sequence. ...

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• About authors ot this complex
• ETS_all_contacts alignment
• ETS_water_bridges

BLASTCLUST - BLAST score-based single-linkage clustering. ... BLASTCLUST automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA. ... The primary input format for BLASTCLUST is a FASTA-format sequence file. ... Another type of input is a sequence hit-list previously saved by BLASTCLUST (in this case BLASTCLUST will use pre-computed HSP data instead of making de novo comparisons). ...

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• GeneBee service result

... We used the dataset of 43 complete genomes of organisms from different domains of life (including bacteria, archaea, plants, protists, fungi and animals) to test the idea that it is possible to separate predicted protein-coding genes with different phylogenetic history (putative HGT or contamination) by comparing arrays of protein BLAST bit scores and clustering genes with similar arrays of these scores. ... These sequences are likely candidates for Drosophila to Wolbachia horizontal gene transfer. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/28.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/156.pdf

... Shapley H. - Studies of Magnitudes in Star Clusters II. On the Sequence of Spectral Types in Stellar Evolution . ... Название: Studies of Magnitudes in Star Clusters II. ... Автор: Shapley H. Язык: . ...

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• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Theodoridis S., Koutroumbas K. - Pattern recognition :: Электронная библиотека
• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• wLake program homepage
• SVETKA, a program for multiple sequence alignments analysis

... NGC1850: Star Cluster in the LMC . ... Credit: R. Gilmozzi ( STScI / ESA ) S. Ewald, ( JPL ), NASA Explanation: NGC1850 is a large cluster of stars located a mere 166,000 light-years from Earth in our neighboring galaxy the Large Magellanic Cloud (LMC). ... Yellowish stars are the main cluster stars, sun-like main sequence hydrogen burners about 50 million years old. ... Publications with keywords: star cluster - LMC - stellar evolution - star - cluster - NGC 1850 . ... The Star Clusters of NGC 1313...

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• NGC 7789: Galactic Star Cluster
• Globular Cluster NGC 2419
• Астронет > NGC 7789: Galactic Star Cluster

Rastorguev А.S. "Astronomical Distances" (Lecture course for postgraduates, 2009-2016) . Part 1. ... Trigonometric parallaxes of stars. Moving clusters distances. ... Photometric distances: general approach. Normal stars as "standard candles". ... Main Sequence fitting or distance scale of star clusters. ... Moving photospheres technique. Cepheid distance scale and P-L relations. RR Lyrae distance scale. ... Globular clusters luminosity function. ...

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... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... sequences : . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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• allpy: b2ec17578145 lib/block.py
• allpy: ab9e2260a60a lib/block.py
• allpy: a016cad5f5a0 lib/block.py

PETROTYP has been designed for clustering igneous rock compositions given as concentrations of major element oxides. This program is based on principles of hierarchical grouping of objects that are characterized by an array of parameters described as an objective function (Ward, 1963). The major principle involves a subsequent combining of samples having the minimum geochemical distance (GD) with respect to other rocks or average cluster compositions formed at a previous stage. ...

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... Structure of Data . ... Catalog . ... In SAI OCL Catalog, we introduce our work on investigation of the Milky Way system of open star clusters. The main goal of our study is a search for new clusters using huge surveys. 168 new clusters have been already discovered by us using J,H,Ks data from 2MASS point source catalog. ... For 141 new clusters, we found their physical parameters using J,H,Ks data from 2MASS catalog and, for a number of clusters, our UBVRI CCD observational magnitudes. ...

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• SAI OCL Catalog Description
• SAI OCL Catalog Berkeley 71
• SAI OCL Catalog Berkeley 19

Integration of Fuzzy c-Means Clustering algorithm with PostgreSQL database management system" . Miniakhmetov R.M., Tsymbler M.L. The integration of data mining algorithms with relational database management systems (DBMS) is a topical issue. ... This paper suggests an implementation of Fuzzy c-Means Clustering algorithm for the PostgreSQL open-source DBMS. ... Keywords: fuzzy clustering, integration clustering algorithms with relational DBMS . PostScript (in Russian) (787KB) . ...

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• "Optimization algorithms for DSMC computations on parallel clusters"
• "Microarray data analysis with a fuzzy clustering algorithm"
• "Gradientless parallel geometry optimization of Bi 3+ 5 cluster and its

This is very short lesson. ... The reason of this is that dynamic load balancing allows the PC GAMESS/Firefly to use coarser-grained parallel algorithms with much less work duplicated across nodes and typically with much more efficient, optimized memory access patterns. ... To activate dynamic load balancing, just add the following line to your PC GAMESS/Firefly input: . ... Details on the MP2 energy code and p2p interface implementation in the PC GAMESS/Firefly. ...

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• PC GAMESS v. 7.0.7 benchmarks and scalability on Myrinet Opteron Linux cluster

... July 9, 1999 . NGC 7789: Galactic Star Cluster . ... Explanation: At 1.6 billion years old, this cluster of stars is beginning to show its age. NGC 7789 is an open or galactic star cluster about 8,000 light-years distant toward the constellation Cassiopeia and lies near the plane of our Milky Way galaxy. ... These have evolved from main sequence stars like the sun into the gaggle of red giant stars apparent (with a reddish-yellow cast) in this lovely composite color image. ... About APOD > . ...

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• APOD: January 6, 1999 - M6: The Butterfly Cluster
• APOD: December 13, 1997 - The Coma Cluster of Galaxies
• APOD: May 3, 1997 - Giant Cluster Bends, Breaks Galaxy Images

Roman Sutormin rsutormin@gmail.com Professional experience 05/2013 ­ present: Lawrence Berkeley National Laboratory (Berkeley, CA, USA) Software developer Development of JSON based storage system used for keeping biological data involved in public KBase services. ... 10/2009 ­ 08/2011: Mail.Ru Group (Moscow, Russia), Software developer Support and development of data warehouse (PostgreSQL) and administration web tool (JBoss + GWT) on serverside of MMO game "Allods Online". ... 2013 Jul 1514(1):476. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2013.pdf
• http://storage.bioinf.fbb.msu.ru/~roman/mol_biol_mosk_2006.pdf

... Shvilkina L.B. , Belega E.D. , Elyutin P.V. , Trubnikov D.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 42, ? ... Lhagva O. , Badamdamdin R. , Strakhova Si , Hehnmedeh L. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 27, ? ... Balashov V.V. , Grum-Grzhimailo A.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 23, ? ... в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 16, ? ...

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• Journal of Cluster Science - журнал | ИСТИНА - Интеллектуальная Система
• Ipatov A.P. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Alvarado F. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

... Bioinformatics Portal . GeneBee . ... Bioinformatics Portal of A.N.Belozersky Institute, . Moscow State University . Supported by the Russian Foundation for Basic Research, grant 13-07-00969-a . Original Services of GeneBee Group . Databanks screening . Sequence analysis . Screening by keywords . AliBee Multiple alignment Release 3.0 . AliGraf Graphical Alignment . AliComp Alignments Comparison . Screening by similarity Release 3.0 . ...

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• BLAST Basic Overview
• Databases
• MUSCLE User Guide

COMPARISON OF CLUSTERING ALGORITHMS FOR SPEAKER IDENTIFICATION Nikolay Lubimov, Evgeny Mikheev, Alexey Lukin Moscow Lomonosov State University, Moscow, Russia In this paper we consider the problem of text-independent speaker identification that refers to acoustic recognition research. ... We have performed the comparison of different clustering methods for speaker identification: the standard K-means clustering, K-means++, Linde-Buzo-Gray, Fuzzy C-means, and Gustafson-Kessel algorithms. ...

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• http://imaging.cs.msu.ru/pub/2010.DSPA.Lyubimov_Lukin.CWM.ru.pdf
• View publication | Laboratory of Mathematical Methods of Image Processing

D.Sokoloff, E.Illarionov, Cluster analysis for solar butterfly diagrams, Межд. конф. Теория вероятностей и ее приложения, посв. 100-летию Б.В.Гнеденко, Тезисы докл., М., URSS, 2012, с. 135 - 136. ... We apply two algorithms of cluster analysis for this purpose, namely DBSCAN and C- means, and demonstrate their ability to separate the wings of contemporary butterfly diagrams based on the sunspot group density in the diagram only. ...

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• Cluster analysis for pattern recognition in solar butterfly diagrams, AN, {\bf
• Mikushin, D.N., and V.M. Stepanenko. The implementation of regional atmospheric