... help . ... allpy/util.py utils/markup_to_file.py . ... allpy/util.py . ... 2.1 --- a/utils/ markup _to_file.py Sun Jun 10 16:08:47 2012 +0400 2.2 +++ b/utils/ markup _to_file.py Thu Jun 14 19:05:28 2012 +0400 2.3 @@ -3,51 +3,53 @@ 2.4 import sys 2.5 import optparse 2.6 import copy 2.7 -from allpy import protein, markups 2.8 +from allpy import protein, markups, util 2.9 2.10 -parser = optparse.OptionParser() 2.11 - parser.add_option ( --input- format , default= markup , 2.12 - ...

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... Recommended values . Start word length . Start length of motiff for Multiple sequence alignment. ... Max N Mismatches . ... Min score . ... Gap parameter . This parameter defines gap scoring. the grater this value is the stronger gap will be panalysed . ... If inforation content of a column is less than given value the column should be not included into alignment. the grater this value is the stronger gap will be panalysed . ... Max loop . Max energy of a helix . ... cgcatagctc cacca . ...

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• SDPsite - Algorithm Format requirements
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... TreeTop - Phylogenetic Tree Prediction . The source sequence multiple alignment could be formed from low and upper case letters. Upper case letters will show that there is a homology between correspondent fragments in alignment. ... Tree and Picture Options . Extra tree format . None Phylip Phylip (multiline) Nexus Nexus (TREES block only) Hennig86 . ... None Slanted Slanted 2 Rectangular Rectangular 2 Phylogram Unrooted Unrooted 2 . ... Alignment . Alignment example: . ...

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• Multiple alignment
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The NTP standard specifies an extension which provides cryptographic authentication of received NTP packets. ... The specification allows any one of possibly 4 billion keys, numbered with 32-bit key identifiers, to be used to authenticate an association. ... In the case of MD5, the keys are 64 bits (8 bytes). xntpd reads its keys from a file specified using the -k command line option or the keys statement in the configuration file. ... A zero key in NTP format would be specified as 8080808080808080 . ...

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• SAL- Numerical Analysis - Discrete Methods Related Tools - ipol
• SAL- Other Scientific Fields - Chemistry, Biology Related - NJplot
• SAL- Computer Graphics, Images Signals - CAD, Drawing Painting Tools - XPaint

... If you have been using a tool such as the line drawing tool which does not allow you to select other objects, you can use this menu item to return to the normal selection cursor. ... This puts a colored copy of either text or a drawn object behind it. ... Your options are color , (which lets you set either a plain color or one of many gradients) Clipart (which gives a dialog box to let you find your clipart on your hard drive) or picture , which again gives a dialog box to find the picture you want....

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... TOPICLIST{" <option>$name</option>"}% creates an option list (for drop down menus). ... Web index, e.g. list of all webs. ... WEBLIST{" $name " webs="Trash,public" selection="TWiki" separator=" "}% Dropdown of all public Webs + Trash Web, current Web highlighted. ... List of users and groups who are allowed to change the current topic. ... List of users and groups who are not allowed to rename topics in the TWiki web. ... List of users and groups who are allowed to rename topics in the TWiki web. ...

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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• SVETKA, a program for multiple sequence alignments analysus
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... help . find changesets by author, revision, files, or words in the commit message Template Usage Mercurial allows you to customize output of commands through templates. ... Usage: $ hg log -r1 --style changelog A template is a piece of text, with markup to invoke variable expansion: $ hg log -r1 --template "{node}\n" b56ce7b07c52de7d5fd79fb89701ea538af65746 Strings in curly braces are called keywords. ... The changeset bisection status. bookmarks List of strings. ...

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... bool printer_set_option ( resource handle, int option, mixed value) . ... PRINTER_MODE : specifies the type of data (text, raw or emf), value must be a string. ... PRINTER_PAPER_FORMAT : specifies the a predefined paper format, set value to PRINTER_FORMAT_CUSTOM if you want to specify a custom format with PRINTER_PAPER_WIDTH and PRINTER_PAPER_LENGTH. value can be one of the following constants. ... PRINTER_FORMAT_LETTER : specifies standard letter format (8 1/2- by 11-inches). ...

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SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

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... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Programs . ... dbmmanage is used to create and update the DBM format files used to store usernames and password for basic authentication of HTTP users via mod_auth_dbm . Resources available from the Apache HTTP server can be restricted to just the users listed in the files created by dbmmanage . ... One can usually use the file program supplied with most Unix systems to see what format a DBM file is in. ...

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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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All Firefly versions can take optional command line arguments. ... firefly [optional command line options in any order] [optional list of working directories] . ... The list of most widely used command line options is given below: . ... Disables validity check of the command line arguments (e.g., check for valid names of files and directories, etc...) passed to Firefly. ... However, if this option is not given, one must provide the list of working directories when running Firefly in parallel mode. ...

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... Mandatory: no # Default: # SourceIP= ### Option: EnableRemoteCommands # Whether remote commands from Zabbix server are allowed. # 0 - not allowed # 1 - allowed # # Mandatory: no # Default: # EnableRemoteCommands=0 ### Option: LogRemoteCommands # Enable logging of executed shell commands as warnings. # 0 - disabled # 1 - enabled # # Mandatory: no # Default: # LogRemoteCommands=0 ##### Passive checks related ### Option: Server # List of comma delimited IP addresses (or hostnames) of Zabbix servers. ...

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Электронная библиотека Попечительского совета . ... Lane S., Love S., Bowers B. - Using FileMaker 8 . ... Название: Using FileMaker 8 . Авторы: Lane S., Love S., Bowers B. Аннотация: . ... Authors Scott Love and Steve Lane are FileMaker experts who were involved in the development of FileMaker 8, and they bring that knowledge to you in Special Edition Using FileMaker 8. ... Access via FileMaker Mobile extended privilege . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... The new format is set by means of prtcformat statement, for example, the default CompHEP table format can be set by: prtcformat fullname:' Full Name ', name:' p ', aname:' ap', spin2,color,mass,width, aux, texname:' latex P name ', atexname:' latex aP name ' . Each column of the table is described by the entry prop:title=value, where prop is the name of particle property, title is shown in the title line, and value is default value used if the property of specific particle is not set. ...

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Search Pattern Cookbook The Search function is very powerful. ... Type* | ... Enable the user to filter this list based on the values of !TopicStatus ---+++ Solution verbatim class= tml % SEARCH { TopicClassification='%URLPARAM{ type }%' type = query nonoise= on sort= topic format= * $ topic - font face='arial,helvetica' size='1' _last modified by_ $wikiusername _on_ $date /font %BR% nbsp; nbsp ... This topic: System > WebHome > Macros > FormattedSearch > SearchPatternCookbook . ...

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grd2xyz - Converting a grdfile to an ASCII or binary table grd2xyz grdfile [ -H [ nrec ] ] [ -R west / east / south / north [ r ] [ -S ] [ -Z [ flags ] ] [ -bo [ s ] ] grd2xyz reads a binary 2-D grdfile and writes out xyz-triplets in ASCII [or binary] format to standard output. Modify the precision of the ASCII output format by editing the D_FORMAT parameter in your .gmtdefaults file, or choose binary output using single or double precision storage. ... Ignored if binary output is selected. ...

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fitshdr - FITS-file headers manipulation tool fitshdr [options] [FITSfile_name] . ... fitshdr [options] --edit FITSfile_name . ... If You want to modify headers of FITSFILE using new FITS-header lines from HEADER file (or from stdin), You have to use this option (You can skip this option, if -H or --header option is used). ... Empty header lines are not displayed (in 'dump' mode only). --line-offsets . ... In 'dump' mode: file offset will be displayed for each header line. --no-line-offsets . ...

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documentstyle{article} \ input idevn.tex % TeX macros that ease ITRANS devanagari font usage %----- % ITRANS song book....prepend this header to print out songs, % using TeX (either Devnac or Devnag font ) %----- % ------- ------ ----- User Configuration Options ----- ----- ------ % Page Format: % \def\maketwocolumn{YES} % Uncomment this for 2-column printing % \def\makelandscape{YES} % Uncomment this for landscape format % Font Size To ... Frans's font.. ...

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