... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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• Nhunt

Full-Text Search in PostgreSQL: A Gentle Introduction . ... Full-Text Search ( FTS ) is a search for the documents, which satisfy query and, optionally, return them in some order . ... Moreover, modern information systems are all database driven and there is a need in IR (Information Retrieval) style full text search inside database with full conformance to the database principles ( ACID ). ... Search machines parse text files and store associations of lexemes (words) with their parent document. ...

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• GiST - Introduction
• Open Source Convention
• Query Operations

Inline search, shows a search result embedded in a topic . Syntax: %SEARCH{"text" .. ... Search topic name (title); the text (body) of topic; or all (title and body) . ... keyword : use Google-like controls as in soap "web service" -shampoo ; searches word parts: using the example, topics with "soapsuds" will be found as well, but topics with "shampoos" will be excluded . ... BookView search, e.g. show complete topic text . ... Example: %SEARCH{"wiki" web="Main" scope="topic"}% . ... Topic: * | ...

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• %TOPICTITLE% (1 vs. 2) - TWiki
• %TOPICTITLE% (17 vs. 18) - TWiki
• SearchHelp - TWiki - TWiki - (printable)

... PHP 4 >= 4.0.5) udm_set_agent_param -- Set mnoGoSearch agent session parameters . ... The following parameters and their values are available: . ... The following values available: UDM_MODE_ALL - search for all words; UDM_MODE_ANY - search for any word; UDM_MODE_PHRASE - phrase search; UDM_MODE_BOOL - boolean search. ... Note that tracking is implemented in SQL version only and not available in built-in database. ... UDM_PARAM_WEIGHT_FACTOR - represents weight factors for specific document parts. ...

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• LDAP functions
• ldap_search
• dba_firstkey

... The approach for estimation of the homology search program sensitivity in nucleotide case was proposed in paper I.Anderson, A.Brass , "Searching DNA databases for similarities to DNA sequences: when is a match significant?" ... Seven sequences were chosen to have length varying from 100 to 1000 bp. ... Each of the 1000 artificially evolved sequences was used as a query for database search with Genebee search, blast-2.0.8 and fasta-3.3 as search engine. ... Sequence length . ... 100 . ... Blast 2.0 ....

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• Selected Scientific Journals - Search Engines
• BLAST Basic Overview
• GeneBee BLAST 2.2.22+ Services Help

What would you like to search for? ... Case sensitive Match whole word Recent publications first . ... What to do if you are looking for ... words iron and oxide in the same record: iron and oxide . both these words or chemical formulae: (iron and oxide) or Fe2O3 . ... That's why do not use Co instead of cobalt : you will find Co even in al co hol! ... The hidden part of the database allows you to use full names of chemical elements instead of the short ones (like nickel instead of Ni ). ...

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• Best search engines for finding scientific information in the Internet:
• Database: publications on x-ray absorption spectroscopy

By default a search looks into topic titles, topic texts and form fields in the current web . ... Multiple words are combined: intranet web service returns all pages that have the three words anywhere in the page . ... Use Google-like queries as in soap "web service" -shampoo ; searches word parts: using the example, topics with "soapsuds" will be found as well, but topics with "shampoos" will be excluded . Word search . ... Public webs . ... This topic: System > WebHome > WebSearch > SearchHelp . ...

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• PerlDoc < System < Foswiki
• RegularExpression < System < Foswiki

Search engine provided by WebGlimpse . String to search for: . ... Return only files modified within the last days. Maximum number of files returned: 10 50 100 1000 . Maximum number of matches per file returned: 10 30 50 500 . Maximum number of characters output per file: . ... sorted by author . sorted by date . sorted by subject . ...

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• Work notes

You can search database for submitted information. ... Character * specifies arbitrary character sequence (eg. '*n' will result: John, Martin etc.) Character * is placed at end of line automatically ('Mar*' = 'Mar' will result: Martin, Martina etc.) Blank form will result ALL database records. ... Family name: . ... Topic: . ... Seismo-tectonics of Tsunami 3. Numerical and Analytical Models of Local Tsunami Behavior 4. ... Recent Local Tsunamis 8. ... Information . ... Database search . ...

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. Press the ESC key to enter command mode before using these commands. To search Do this ... forward for a pattern / pattern <RETURN> backward for a pattern ? pattern <RETURN> repeat previous search n repeat previous search in N reverse direction .

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• Searching the contents of a file
• Searching by keyword
• Fast searches with the fgrep utility

... Query = BAA14040.1 (90 letters) Database : orf 13 sequences ; 610 total letters Searching..................................................done Score E Sequences producing significant alignments: ( bits ) Value D89965_5 187 9e-53 D89965_13 12 6.6 D89965_5 Length = 138 Score = 187 bits (475), Expect = 9e-53 Identities = 90/90 (100%), Positives = 90/90 (100%) ...

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• http://kodomo.cmm.msu.ru/~plazmoliz/Term3/sup/all_blastn.txt
• http://kodomo.cmm.msu.ru/~plazmoliz/Term3/sup/pyr_D.txt
• http://kodomo.cmm.msu.ru/~yaros/term3/BlockI/uchcodbel.txt

... Sbjct : 9135 ctggc 9131 Database : thr Posted date: Feb 20, 2008 8:14 PM Number of letters in database : 12,243,887 Number of sequences in database : 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences : 884 Number of Hits to DB: 142,083 Number of extensions: 8872 Number of successful extensions: 67 Number of ...

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• http://kodomo.fbb.msu.ru/~element/Term3/pm.txt
• http://kodomo.fbb.msu.ru/~ogion/projects/Evolution_of_sequences/hemn_yp.blast
• allpy: ddf85d0a8924 allpy/markups.py

... Foswiki::Search::InfoCache - Support package; cache of topic info. ... ObjectMethod finish() . ObjectMethod metacache . ... If _callback is set, that means the caller wants results as soon as they are ready. =_callback_ should be set to a reference to a function which takes _cbdata as the first parameter and remaining parameters the same as 'print'. ... Note: If format is set, template will be ignored. ... This topic: System > WebHome > ReferenceManual > DeveloperDocumentationCategory > PerlDoc . ...

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• (backlinks in System Web) FormattedSearch < System < Foswiki
• (backlinks in all Webs) FormattedSearch < System < Foswiki
• (backlinks in System Web) VarSCRIPTSUFFIX < System < Foswiki

Электронная библиотека Попечительского совета . ... Korf I., Yandell M., Bedell J. - Blast (Basic Local Alignment Search Tool) . ... Название: Blast (Basic Local Alignment Search Tool) . Авторы: Korf I., Yandell M., Bedell J. Аннотация: . ... BLAST (Basic Local Alignment Search Tool), is a sophisticated software package for rapid searching of nucleotide and protein databases. ... BLAST is the only book completely devoted to this popular suite of tools. ... BLAST basics and the NCBI web interface . ...

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• Papadopoulos A.N., Manolopoulos Y. - Nearest Neighbor Search: A Database
• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Calishain T. - Web Search Garage :: Электронная библиотека попечительского

Database: . ... Affymetrix official site . ... Clone/Gene ID converter . ... Probe set search: . Affymetrix probe set identifier example: "238900_at" . ... Search . Text search: . Gene official symbol (*-wildcard) example: "c1orf*" . Word or phrase in gene official name example: "receptor" . ... Gene search: . ENSEMBL gene identifier example: "ENSG00000026508" . NCBI Entrez Gene identifier example: 7503 . HUGO gene identifier example: 1681 . ...

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• MTPro

... Prev . Next . ... MATCH(seek,vector[,type]) . MATCH function finds the row index of @seek in @vector and returns it. If the area is longer than it is wide then the sense of the search is rotated. ... If @type = 1, finds largest value <= @seek. If @type = 0, finds first value == @seek. If @type = -1, finds smallest value >= @seek. For type 0, the data can be in any order. ... And in this case, MATCH uses a binary search to locate the index.) ...

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• HelpOnSearching - UNИX
• Internet Search Engines
• LOOKUP

... The MoinMoin search engine is capable of using regex and other operators in the search input fields. ... By default, terms are connected by conjunction - only pages containing all search term are returned. ... TERM . a minus (-) before a search term will exclude any pages containing that term from the results. regex:TERM . ... title:TERM . ... searches for pages in a domain like underlay or system (for system pages) . ... search for pages containing the word "help" but which are not system pages . ...

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• HelpOnXapian - UNИX

. Please use the reference to MASTER DataBase as Lipunov et al., 2010, MASTER Robotic Net, Advances in Astronomy, vol. 2010, pp. 1-7 . - days . MASTER , 2002-2016

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... IPI-1D is a set of programs for processing and interpretation of VES data within the framework of horizontally layered models . ... Except programs already listed above, our specialists developed some programs for modeling, studying, visualization and interpretation of resistivity data in anisotropic media (anisotropic halfspace, horizontally layered media with anisotropic basement and vertical contact of two anisotropic media). ...

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... CENTRE FOR PHOTONUCLEAR EXPERIMENTS DATA . Online Services | ... ONLINE SERVICES. ... G E N P D T H3 A HE3 HE4 LI6 C12 O16 O17 O18 S32 AR40 TI48 BRST BRST-POL MON MON-POL POL . ... CDFE Head : Vladimir V. Varlamov . ...

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• CDFE => Online Services => NSR Search Engine
• CDFE => Online Services => Nucleus Ground State Parameters
• CDFE => Online Services