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... Sooner or later, you may need to assign the contents of one zval container to another. ... To copy this complex kind of data, use the copy constructor . ... Now, in order to effectively duplicate its contents, the copy constructor is called. ... If you omit the call to the copy constructor in this example, both parameter and return_value would point to the same internal data, meaning that return_value would be an illegal additional reference to the same data structures. ...

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SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins . The GDE alignment format is one of the standard alignment formats. Popular programs for sequence alignment, e.g. ClustalW, can save alignment in this format. ... Sequences are placed one after another, the name of each sequence is placed onto a separate line and begins with ‘%’. ... Thus the alignment looks like this: . ... back to input format rules . ...

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GDE alignment format is one of standard alignment formats. A popular program for sequence alignment, Clustal, for example, can save alignment in this format. In this format, all letters indicating amino acids are in lower case, gaps are indicated by dashes. Sequences are placed one after another, name of each sequence is placed onto a separate line and begins with ‘%’. The sequence is placed afterwards beginning on the next line and may be broken into several lines. ...

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