... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight

An algorithm for constructing the union, intersection and difference of arbitrary polygons on the basis of triangulation with linear-time complexity on average" . ... The application of triangulation with constraints for constructing overlays of arbitrary polygons is considered. A comparison of a new algorithm with some others is given. ...

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• "A survey of algorithms for constructing a Delaunay triangulation"
• "A numerical method for approximate calculation of the value function in the
• "Algorithms for constructing triangulations with constraints"

... In this article we considerљcalculationљof discrete Laplacian for 1D arrays usingљpython/numpy/scipy. We introduceљthe sparse matrix technique that is rather efficient for computation of certain types of diffusion PDE. ... 1 комментарий " Constructing discrete Laplacian via sparse matrix " . Reaction-diffusion systems in 2D space with python ERG Research Group: Лаборатория теоретической биофизики написал (Январь 26th, 2016 2:13 пп) . ... Constructing discrete Laplacian via sparse matrix . ...

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• python ERG Research Group: Лаборатория теоретической биофизики
• admin ERG Research Group: Лаборатория теоретической биофизики
• scipy ERG Research Group: Лаборатория теоретической биофизики

... Laboratory of Mathematical Methods of Image Processing . ... Image analysis . ... Ringing effect . ... It can be efficiently used as a post-processing method for global image deblurring methods . ... Development of edge width estimation algorithm is important for image enhancement and image quality analysis methods. ... Ringing effect so known as Gibbs phenomenon in mathematical methods of image processing is the annoying effect in images and video appeared as rippling artifact near sharp edges. ...

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... Among them there is forward modeling for uniform anisotropic halfspace to calculate ARS diagrams for different arrays (AM (U), AMN (E), dipole equatorial (D), three-pole (T), Y and Arrow-type (AT) array, etc.), when source of current is on the earth surface or at a depth. All linear arrays (AM, AMN, dipole axial) give anisotropy ellipses with axis ratio equal to anisotropy coefficient, while non-linear arrays (D and others) have this ratio equal to anisotropy coefficient in the 5-th power. ...

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• TRF_2d. Page2

... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• About this project
• Inquiry information || Distances
• Inquiry information || Parsimony algorithm

Previous article . Next article . ... The number of generators of a crystallographic space group . ... of a minimal generator set of a space group G , a numeric parameter Q called critical coordination number was constructed. ... was calculated for trimetric space groups. ... Moscow University Chemistry Bulletin . 2012, Vol. ... Copyright (C) Chemistry Dept., Moscow State University, 2002 . ... Copyright (C) Chemisty Department of Moscow State University . ...

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• Moscow University Chemistry Bulletin Vol. 46, No. 6, P. 411 (2005)
• Molecular Modeling in Chromatostructural Analysis as a New Approach in GC/MS of
• Moscow University Chemistry Bulletin Vol. 42, No. 2, P. 95 (2001)

... find changesets by author, revision, files, or words in the commit message . paired_cores/score.py: change method of score evaluation Boundary positions of blocks are not considered. Columns represented with one sequence or pure gap columns are not considered. Calculate weighted average of number of connected components in columns. ... 5 # defaults for set_pdb_chain . ... 15 timeout = 10 # time in sec. for BRON-KERBOSH algorithm . ... 21 # max number of cores (including main core) . ...

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• allpy: ee2c10aa74b8 allpy/graph.py
• allpy: ee2c10aa74b8
• allpy: ee2c10aa74b8 Makefile

Exploiting non-Abelian symmetry in AO-driven CIS, RPA, and TDDFT calculations Alex A. Granovsky Laboratory of Chemical Cybernetics, M.V. Lomonosov Moscow State University, Moscow, Russia February 15, 2006 RPA & TDDFT master equation RPA & TDDFT master equation A and B matrices RPA & TDDFT master equation How to solve? ... The most efficient way to evaluate this part of the matrixvector product is to use MO basis. ... The symmetry is defined by the symmetry of the target CIS state Reminiscence. ...

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... Forced Nonlinear Waves Governed by Inhomogeneus Burgers Equation . ... Excitation and propagation nonlinear processes governed by inhomogeneous Burgers equation with non-zero right-hand-side (r-h-s) are considered. By use of characteristics method both qualitative and quantitative properties of solutions for arbitrary forms of r-h-s are studied. ... Concequently, we observe the nonlinear "chaos-order" transformation. ...

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... It was necessary to construct quite a different type of parachute to be light, compact, encased in a parapack and reliable. At first most parachute designers considered it to be hardly possible for a canopy to open in the air without the aid of some special devices, such as an umbrella spokes, compressed air or powder explosive charges. ... Later on a great number of different parachute systems were worked out and introduced by Russian parachute designers Nikolai Lobanov, Igor Glushkov and others. ...

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... Research programm of the laboratory-chair< . ... Laboratory-chair of Discrete mechanics on a microscopic scale . ... Thus the structures of the physical world are not physical objects but physical processes. ... The primitive entity is called a material point. ... The value of the property “existence” of the material point varies from “the material point does not exist” to “the material point exists” by this process. ... Let call this structure a dynamical graph or a d-graph. ...

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• Russian Interdisciplinary Temporology Seminar

... About lab . ... Online Journal "Computer graphics and multimedia" (in russian) . ... Algorithms for calculating parameters of virtual scenes in computer vision tasks . ...

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• Saliency Map Estimation | Graphics and Media Lab
• Mouse Control via User's Head Movements | Graphics and Media Lab
• Saliency Map Estimation | Лаборатория компьютерной графики и мультимедиа

Next: A Simple Example With Up: CHIRPLET TRANSFORM SUBSPACES Previous: CHIRPLET TRANSFORM SUBSPACES . We begin by discussing the CF plane, and then present an argument for re-parameterizing this plane in terms of two frequency indices, leading to what we will be calling ``frequency-frequency'' (FF) analysis. ... Computing the CF plane of a signal, s ( t ), is equivalent to correlating the signal with a family of chirps that are parameterized by chirprate, c and center frequency, . ... Figure 7 . ...

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• Long description of example of cell background calculation
• Assigning property values, Cascading, and Inheritance
• Historical Notes

... Alexandrowicz Z. - Entropy Calculated from the Frequency of States of Individual Particles . ... Название: Entropy Calculated from the Frequency of States of Individual Particles . ... Entropy is related to the frequency of states for individual particles. ... The ratio of the frequencies of two local states involved in a spin-flipping conflgurational transition is related to an entropy change. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Becker G.F. - On the Earth Considered as a Heat Engine :: Электронная
• Adamchik V.S., Marichev O.I. - The algorithm for calculating integrals of
• Caforio G., Kummel G. - Military Missions and Their Implications Reconsidered:

Geometrical core (core) is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chains. ... Minimal core size (#aa's) . ... Alternative core new atoms (%) . ... Geometrical core is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chain. ... Each input sequences is aligned to the corresponding sequence obtained from the ATOM section of the protein chain in the PDB file. ...

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... This information is needed for description of interaction of atom and ion with charge particles and photons. ... The project calculations are based on variational method and wave function expansion in a linear combination of hydrogen - like functions with effective charges. wave function of atoms, wave function of ions, cross section calculations, helium-like, variational method, Hartree - Fock, excited states, ionization, single excitation, double ionization, double excitation . ...

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Network Working Group Request for Comment #167 NIC #6784 Socket Conventions Reconsidered Athay Bhushan (MAC) Bob Metcalfe (Harvard) Joel Winett (LL) 24 May 1971 Category: C1, C3, C8 Related RFCs: #147, #129 Related Functional Documents: #1 [Page 1] RFC 167 Socket Conventions Reconsidered The current NCP Protocol says nothing about how hosts should assign socket numbers to process ports, except that the low-order bit is to specify socket gender (i.e., send or receive). ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc167.txt
• http://mirror.msu.net/pub/rfc-editor/internet-drafts/draft-jabley-dnsop-ordered-answers-00.txt
• http://mirror.msu.net/pub/rfc-editor/internet-drafts/draft-egge-netvc-cfl-00.txt

Study of jet transverse structure with CMS experiment at 10 TeV Natalia Ilina (ITEP, Moscow) for the CMS collaboration CMS PAS QCD-08-002 (2009) 1 LOMONOSOV09, MSU, Moscow 24/08/2009 Outline 1. ... 7 LOMONOSOV09, MSU, Moscow 24/08/2009 Monte Carlo predictions HERWIG++ Particle level Jet transverse structure for all jets (black lines) depends on while it does not depend on for gluon and quark jets. ...

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• http://nuclphys.sinp.msu.ru/conf/epp10/Filchenkov.pdf
• http://nuclphys.sinp.msu.ru/school/s09/09_11.pdf
• http://nuclphys.sinp.msu.ru/school/s09/09_08.pdf

. QM/MM approach is applied to modelling of GTP hydrolysis reaction mechanism. We use X-ray structure as initial atom coordinates for QM/MM calculations. We consider 2 systems: free EF-Tu and complex with ribosome.

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