... Proper rna.Monomer, rna.MonomerType, rna.Sequence . ... 4 pdb information: code, chain, model . ... 21 def std_id ( pdb_id , pdb_chain , pdb_model = None ): . ... 100 def set_pdb_chain ( self , pdb_file , pdb_id , pdb_chain , pdb_model = 0 ): . ... 178 def pdb_save ( self , out_filename , pdb_chain ): . ... 181 def accept_chain ( self , chain ): . ... 192 def pdb_add_sec_str ( self , pdb_chain ): . ... 209 def pdb_has ( self , chain , monomer ): . ... 212 def secstr_has ( self , chain , monomer ): ....

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... NGC 281 . ... Перевод: Д.Ю.Цветков Пояснение: Рассматривая космическое облако, занесенное в каталог как NGC 281 , можно и не заметить звезды рассеянного скопления IC 1590 . Однако именно молодые массивные звезды этого скопления, сформировавшегося в туманности, дают энергию для ее свечения . ... Публикации с ключевыми словами: star formation - NGC 281 - звездообразование - эмиссионная туманность . Публикации со словами: star formation - NGC 281 - звездообразование - эмиссионная туманность . ...

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... 14, 1272-1280, 1993 1CIT REM F.Eisenhaber et al., ... 1CIT ASG GLY A 230 1 C Coil 360.00 -178.20 87.8 1CIT ASG ARG A 231 2 C Coil -129.77 -14.92 155.0 1CIT ASG CYS A 232 3 T Turn -67.02 123.47 6.6 1CIT ASG ALA A 233 4 T Turn -71.32 -2.09 43.7 1CIT ASG VAL A 234 5 T Turn -107.49 -62.52 3.7 1CIT ASG CYS A 235 6 T Turn -99.71 -20.48 8.4 1CIT ASG GLY A 236 7 T Turn 97.41 -3.33 30.9 ...

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... Secondary structure . ... Более подробно рассмотрен участок 898-1074 цепи B: . ... Chain B: --S1-H1-S2-H2-H3-S3-H4-H5-H6-H7-S4 . H8-H9-S5-H10-H11-H12-S6-H13-H14-H15;--H16 . H17-S1-H18-H19-S2-H20-H21-S3-H22-H23-S4-S5 . H24-S6-H25-S7-S8 -S9-H26-S10-S11-H27-S12 . ... H17-H18-S9-H19-H20-H21-H22-H23-H24-S10-H24-H25 . ... ChainC:-S1-H1-S2-H2-H3-H4-H5-H6-H7-H8-H9-S3-H10 . S4-H11-S5H12-H13-H14-S6-H15-H16-S7-S8-H17-H18 . ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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... 2008 December 10 . Portrait of NGC 281 . ... Explanation: Look through the cosmic cloud cataloged as NGC 281 and it's almost easy to miss stars of open cluster IC 1590 . ... The eye-catching shapes looming in this colorful portrait of NGC 281 are sculpted columns and dense dust globules seen in silhouette, eroded by intense, energetic winds and radiation from the hot cluster stars. ... About APOD | ... NASA Official: Phillip Newman Specific rights apply . ... A service of: ASD at NASA / GSFC . ...

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... This family contains a protein with resolved 3D structure: ENGD_HAEIN/278-361 , pdb ID: 1jal . SDPsite predicts following important positions (numbering corresponds to 1jal ): . ... Mapping predictions onto structure of 1jal : . Associated grouping: . Group 1 . Q8SRN9_ENCCU/277-360 . ... O25293_HELPY/282-365 . Q9PP03_CAMJE/283-366 . ENGD_HAEIN/278-361 . Q8PC60_XANCP/279-362 . Q8XF19_SALTI/279-362 . Q9AAW3_CAUCR/282-365 . ... Q8CMP8_STAEP/281-364 . ...

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The database of RNA secondary structure elements E.F. Baulin, Institute of Mathematical Problems in Biology, Pushchino, Russia, Higher Schoo l of Economics, Moscow, Russia ... Russia, Higher Schoo l of Economics, Moscow, Russia, mroytberg@lpm.org.ru We propose a new definition of the loop, which on the one hand is a generalization of the definition of Mathews-Turner [1], and on the other hand allows to divide into loops an arbitrary secondary ...

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