... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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... This form lets you to produce a list of hydrophobic clusters in a PDB file specified by user. Enter a 4-letter PDB code, e.g.: 1apl : . Search clusters: . ... between chains . Contacts between chains . Set #1 . ... Enter your e-mail here (optional): . ... List of atoms Strict Wide . Chains filter (1-20:A) . Show clusters not smaller than atoms . User data file in PDB format . ...

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• ETS_water_bridges
• Inquiry information || Distances
• HF clusters: algorithm

... Structure of Data . ... Catalog . ... In SAI OCL Catalog, we introduce our work on investigation of the Milky Way system of open star clusters. The main goal of our study is a search for new clusters using huge surveys. 168 new clusters have been already discovered by us using J,H,Ks data from 2MASS point source catalog. ... For 141 new clusters, we found their physical parameters using J,H,Ks data from 2MASS catalog and, for a number of clusters, our UBVRI CCD observational magnitudes. ...

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• SAI OCL Catalog Description
• SAI OCL Catalog Structure
• SAI OCL Catalog Publications

... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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• Geometrical core
• wLake algorithm description

... Chemistry of Coordination Compounds . ... Inorganic Synthesis . ... CLUSTERS AND EXTENDED METAL-METAL BOND SYSTEMS IN INORGANIC COMPOUNDS . ... Cluster compounds, structure & bonding, quantum chemistry . ... Inorganic synthesis, bismuth clusters, metal subhalides . ... inorganic synthesis, clusters, mixed chalcogenides . ... Design, synthesis and investigations of inorganic compounds featuring extended systems of homo- and heterometallic bonds of varying (1D, 2D) dimensionality. ... Kuznetsov . ...

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ABSOLUTE PROPER MOTIONS OF 331 OPEN CLUSTERS . ... The proper motions of stars in the fields of 331 open clusters were taken from Four-Million Star Catalog (4M-catalog) of positions and proper motions (Volchkov et al. ... The absolute proper motions for 21 young open clusters have been derived by comparison of precise relative proper motions of individual stars and their corresponding absolute proper motions. ... Sign of proper motions in RA . ... 0.0001 arcsec/yr . ... rms error in RA proper motion . ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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Abstract "Hard X-ray generation under interaction of femtosecond laser pulses with large molecular clusters" Fedorov D.O. Investigation of hard (2-5 keV) characteristic X-rays generation produced by moderate intensity (10 16 W/cm2) femtosecond laser pulses (energy 5-7mJ) under interaction with large clusters, formed by molecules CF3I, CF2Cl2 in the presence with noble gas (Ar, He), was done for the first time . ... This may be the evidence of the argon concentration increasing in mixed clusters. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2008/Golubev_Gordienko_Djidjoev_en.pdf
• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2011/Dergachev_Shlenov_en.pdf

... Shapley H. - Studies of Magnitudes in Star Clusters VIII. A Summary of Results Bearing on the Structure of the Sidereal Universe . ... Название: Studies of Magnitudes in Star Clusters VIII. ... Автор: Shapley H. Язык: . ...

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• Alonso J.A. - Structure and Properties of Atomic Nanoclusters :: Электронная
• Franke M. - An update algorithm for restricted random walk clusters ::
• Hribernig V., Stetter H.J. - Detection and Validation of Clusters of Polynomial

Today's APOD | ... Editor's choices for the most educational Astronomy Pictures of the Day about globular clusters: . ... Explanation: Globular clusters once ruled the Milky Way . Back in the old days , back when our Galaxy first formed, perhaps thousands of globular clusters roamed our Galaxy . ... APOD: 2002 July 30 - A Star Cluster in Motion . ... Globular star clusters normally roam the halo of the Milky Way, ancient relics of our galaxy's formative years. ... Index | ... About APOD | ...

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• Отдел Изучения Галактики и переменных звезд
• APOD: 2006 August 10 - Galactic Center Star Clusters
• APOD Index - Galaxies: Clusters of Galaxies

. Kudryashov S.I. , Kim B.K. , Zorov N.B. , Kuzyakov Yu.Ya. Mendeleev Communications (in print). Abstract . New positively charged elemental and mixed atomic carbon-nitrogen clusters were detected by time-of-flight mass spectroscopy at laser evaporation of carbon nitride C3N4.25. Laboratory of Laser Diagnostics

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• Moscow University Chemistry Bulletin Vol. 51, No. 5, P. 339 (2010)
• Spinodal decay of labile liquid matter as a new fundamental mechanism of giant
• Moscow University Chemistry Bulletin Vol. 50, No. 1 (2009)

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Moscow State Uiversity . ... STRATEGY: numerical methods for hydrodynamics in porous media . ... AREA: Geophysics, Mechanics . ... AREA: Geophysics, Geology . ... STRATEGY: Numerical simulation of seismic wave propagation in models with complex fluid-filled structures using grid-based multi-scale methods (finite difference, finite elements). ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: Inorganic Chemistry | Moscow University Supercomputing Center
• CLEO: USER & ADMIN-FRIENDLY CLUSTER BATCH SYSTEM | Moscow University
• APPLICATIONS: Physicochemical Biology | Moscow University Supercomputing Center

Peremennye Zvezdy ( Variable Stars ) 26 , No. ... Our BVR CCD photometric study of the globular cluster NGC 7006 permitted us to find two new suspected RR Lyrae variables. A cluster chart is presented with the position of known and suspected variables marked. ... According to the Catalogue of Variable Stars in Globular Clusters (Clement et al., 2001), it contains 76 variables, most of which are RR Lyrae variables, the RR1 to RR0 ratio being 8:55. ... for suspected and some of known variable stars. ...

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• Galactic Center Star Clusters
• The 2MASS Galaxy Sky
• Астронет > Galactic Center Star Clusters

... Shvilkina L.B. , Belega E.D. , Elyutin P.V. , Trubnikov D.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 42, ? ... Lhagva O. , Badamdamdin R. , Strakhova Si , Hehnmedeh L. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 27, ? ... Balashov V.V. , Grum-Grzhimailo A.N. в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 23, ? ... в журнале Zeitschrift Fur Physik D-Atoms Molecules and Clusters , том 16, ? ...

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• Stepanyuk V.S. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Hergert W. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Mamaev V.M. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

Beck R., Frick P., Stepanov R., Sokoloff D. Recognizing magnetic structures by present and future radiotelescopes with RM Synthesis, eprint arXiv:1204.5694, 2012. We investigate whether the method of wavelet-based Faraday rotation measure (RM) Synthesis can help us to identify structures of regular and turbulent magnetic fields in extended magnetized objects, such as galaxies and galaxy clusters. ... We present observational tests to recognize magnetic field structures. ...

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• Beck R., Frick P., Stepanov, R., Sokoloff D. Recognizing magnetic structures by
• Mikushin, D.N., and V.M. Stepanenko. The implementation of regional atmospheric

... Optimization algorithms for DSMC computations on parallel clusters" . Vashchenkov P.V., Kashkovsky A.V., Ivanov M.S. The paper describes some algorithms of dynamic decomposition of computational domains when solving the problems of rarefied gas dynamics by the DSMC method on parallel computing clusters. ... Keywords: DSMC, parallel computations, clusters, algorithms, load balance . PostScript (in Russian) (1.74MB) . PDF (in Russian) (331KB) . PostScript. zip (in Russian) (378KB) . ...

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• "Evaluation of clusters with AMD Barcelona and Shanghai CPUs and Infiniband DDR
• "Three-dimensional LBE simulations on hybrid GPU-clusters for the decay of a
• "Implementation of the lattice Boltzmann method on GPU clusters"

Quantitative Structural Model for Prediction and Analysis of R-loop Forming Sequences in the Genomes Piroon Jenjaroenpun Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg Thidathip Wongsurawat ... -star.edu.sg Vladimir A. Kuznetsov Bioinformatics Institute, A*STAR, Singapore, 138671, piroonj@bii.a-star.edu.sg INTRODUCTION The R-loop is a three-stranded nucleic acid structure that is co-transcriptionally formed RNA- ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/28.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/161.pdf

... Faculty of Physics . ... MSU Physicists (Prof. V.S. Chernysh, Dr. A.E. Ieshkin, Faculty of Physics, and Senior Researcher Yu.A. Ermakov, Scobeltsyn Nuclear Physics Research Institute, MSU) discovered a new mechanism of sputtering with cluster ion beams. A cluster is an assembly of atoms or molecules which quantity is in range from a few up to a few tens of thousands units per cluster. ... Recent decades, interaction of cluster ions with solids has been under extensive investigation. ...

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• XIV Symposium on Atomic, cluster, and Surface Physics