... Wed, 26 Jan 2011 22:25:13 +0300 . Daniil Alexeyevsky . ... Removed all trailing spaces in base.py . ... Mon, 24 Jan 2011 22:01:21 +0300 . ... Thu, 20 Jan 2011 22:31:37 +0300 . ... Fri, 17 Dec 2010 16:36:00 +0300 . ... Trivial fixes in allpy.base.Block . ... Thu, 16 Dec 2010 23:45:57 +0300 . ... Moved leftover junk from allpy.base to allpy.pdb . ... Changed interfaces of allpy.fasta, updated allpy.base accordingly . ... Wed, 15 Dec 2010 23:45:11 +0300 . ... Tue, 14 Dec 2010 21:06:42 +0300 . ...

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• allpy: log

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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• Inquiry information || Distances
• Inquiry information || Parsimony algorithm
• SVETKA, a program for multiple sequence alignments analysus

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• mod_disk_cache - Apache HTTP Server
• mod_cache - Apache HTTP Server

... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help
• Genebee Predicted Annotation

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• x264 codec improvement | Лаборатория компьютерной графики и мультимедиа
• Road monitoring | Graphics and Media Lab

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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. This diagram illustrates the relationship between the reference pixel and device pixels (called "dots" below). The image depicts a high resolution (large dot density) laser printer output on the left and a low resolution monitor screen on the right. For the laser printer, one square reference pixel is implemented by 16 dots. For the monitor screen, one square reference pixel is implemented by a single dot. Return to image.

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• Long description of example illustrating table row height calculations and
• Long description for screen shot of Windows 95 font description GUI
• Long description for example showing caption above a table

... Множественное выравнивание последовательностей. ... Ознакомление с программой Muscle. ... Выполнив команду: wossname alignment я посмотрела список программ EMDOSS, так или иначе связанных с выравниваниями: aligncopy Reads and writes alignments aligncopypair Reads and writes pairs from alignments consambig Create an ambiguous consensus sequence from a multiple alignment diffseq Compare and report features of two similar sequences distmat Create a distance matrix from a multiple ...

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HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• Hewlett Packard 58503A GPS Receiver

Modules | Directives | ... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Modules . Description: . Content cache storage manager keyed to URIs . ... Experimental . ... disk_cache_module . ... This module is experimental. Documentation is still under development... mod_disk_cache implements a disk based storage manager. ... If the mod_disk_cache module has been loaded or compiled in to the Apache server, this directive must be defined. ...

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• INDEX
• Long Description

The QBoxLayout class lines up child widgets horizontally or vertically. ... QBoxLayout  ( QWidget * parent, Direction, int border=0, int autoBorder = -1, const char * name=0 )  . ... QBoxLayout takes the space it gets (from its parent layout or from the mainWindget()), divides it up into a row of boxes and makes each managed widget fill one box. ... The stretch factor applies only in the direction of the QBoxLayout, and is relative to the other boxes and widgets in this QBoxLayout. ...

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• Qt Toolkit - QGroupBox Class
• Qt Toolkit - QCheckListItem Class
• Qt Toolkit - QPopupMenu Class

Series on Stability, Vibration and Control of Systems, Series A - Vol. ... MULTIPARAMETER STABILITY THEORY WITH MECHANICAL APPLICATIONS . ... This book deals with fundamental problems, concepts, and methods of multiparameter stability theory with applications in mechanics. ... Introduction to Stability Theory . ... Read Full Review . ... Since Bolotin's pioneering book on nonconservation problems on the theory of elastic stability, not many books appeared at such a high level, such as this one. ...

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... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 inherit eutils flag-o-matic multilib toolchain-funcs EXTENSIONS = -without- extensions DESCRIPTION= Multiple sequence alignments using a variety of algorithms HOMEPAGE= http:// mafft .cbrc.jp/alignment/software/index.html SRC_URI= http:// mafft .cbrc.jp/alignment/software/${P}${ ...

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• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/t-coffee/t-coffee-9.03.1318-r1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/clustal-omega/clustal-omega-1.2.1.ebuild

... 3.0.3 - 3.0.18 only, PHP 4 >= 4.0.0) imap_setflag_full -- Sets flags on messages . string imap_setflag_full ( int stream, string sequence, string flag, string options) . ... sequence numbers . Example 1. imap_setflag_full() example . mbox = imap_open("{your.imap.host:143}","username","password") or die("can't connect: ".imap_last_error()); $status = imap_setflag_full($mbox,"2,5","\\Seen \\Flagged"); print gettype($status)."\n"; print $status."\n"; imap_close($mbox); . ...

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• imap_clearflag_full
• array_slice
• imap_fetch_overview

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

19. http://www.paleopedology.msu.ru/discussions/messages/272.html

20. CDFE - Centre for Photonuclear Experiments Data - Home page