... Mon, 07 Feb 2011 21:46:43 +0300 . ... utils/flush_left.py . ... utils/flush_left_vblock.py . ... 2.1 --- a/ utils /flush_left.py Mon Feb 07 21:44:38 2011 + 0300 2.2 +++ b/ utils /flush_left.py Mon Feb 07 21:46:43 2011 + 0300 2.3 @@ -17,7 +17,7 @@ 2.4 columns = alignment. columns [options.begin-1:options.end] 2.5 block = protein.Block.from_alignment(alignment, columns = columns ) 2.6 block.flush( left ) 2.7 - alignment.to_fasta( open ( options.out_file , w )) 2.8 + alignment.to_file...

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• allpy: df07f7c7ee56
• allpy: 387f692e2356
• allpy: 0411fa851bba

... Markup We sometimes (very often) want to add marks on an alignment. ... Our definitions Examples What works Projects using allpy Future Converting alignment format alignment = protein. Alignment ().append_file( input_file, format= genbank ) alignment .to_file(output_file, format= fasta ) Converting alignment format -- the uncensored version from allpy import protein input_file = open( input_file.fasta ) output_file = open( output_file.fasta , w ) alignment = protein ...