... blocks_to_pymol(): show blocks with cartoon, other with transparent sticks . ... 1.12 - NOTE: Hide everything except involved chains, represented as cartoon 1.13 1.14 def sequence_to_pdb(s): 1.15 return pdb_id_parse(s.pdb_chain.get_parent().get_parent().get_id())['code'] 1.16 @@ -550,7 +553,13 @@ 1.17 'fit_from': columns_line(columns, fit_from) + and name ca }) 1.18 file.write ( hide everything, all\n ) 1.19 for s in self.sequences: 1.20 - file.write ( show cartoon , %( seq )s\n % {' ...

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• allpy: bc89ae6cb86e allpy/block.py
• allpy: allpy/block.py diff
• allpy: 1048b7a728e7 allpy/block.py

... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• TracChangeset тАУ Tanchiki
• Help: export
• TracChangeset (diff) вАУ Tanchiki

... Contacts with DNA . ... List of conservative Hbonds of ETS domains with DNA backbone . Bond ID . ... All containing DNA, except W and X (18 of 20) . ETS-1, GABP alpha PU.1 from mouse; Elk-1, SAP-1 PDEF from human . ... All containing DNA . All proteins, for which there are structures, containing DNA . ... All containing DNA, except I (19 of 20) . ... List of conserved Hbonds of ETS domains with the DNA major groove . ... ETS-1, GABP alpha PU.1 from mouse; ETS-1, SAP-1 PDEF from human . ...

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• Yeast intein-encoded LAGLIDADG homing endonucleases
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... About lab . ... MSU Graphics & Media Lab (Video Group) . The filter is intended for recovering visual quality of video ripped from DVD (for example, when it contains 4 hours of video data), VideoCD or after decompressing by H.261, H.263, H.264, DivX, XviD, etc. The algorithm decreases blocking artifacts, significantly improving visual quality of video. Filter automatically determines the blockiness's strength on the frame and in the certain part of it, preserving the maximum of details. ...

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• Removing of blocking effect from video | Лаборатория компьютерной графики и
• Smart removal of blocking effects from video | Graphics and Media Lab
• Smart removal of blocking effects from video | Лаборатория компьютерной графики

... Second, alignment of highly similar genomic sequences is useful for comparison of genome assemblies of the same organism or closely related ones. ... Nucleotide pangenome (NPG) of an input set of genomes is a set of aligned blocks, each block composed of orthologous fragments. ... Hemi-stable blocks (h-blocks) include no more than one fragment of a genome and lack a fragment of at least one of genomes. ... Blocks with repeats (r-blocks) include more than one fragment from one or several genomes. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/172.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/42.pdf

A program for automatic detection of aligned blocks in multiple protein alignment. Paste your alignment in fasta-format here: . ... The program works slow - it takes 8 seconds to process alignment of 6 sequences of length 500. The program's development is supported by Russian Foundation for Basic Research (grant 10-07-00685-a) and Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). ...

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• Geometrical core
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Электронная библиотека Попечительского совета . ... Johnson D. - RSS and Atom in Action: Web 2.0 Building Blocks . ... Название: RSS and Atom in Action: Web 2.0 Building Blocks . Автор: Johnson D. Аннотация: . RSS and Atom in Action is organized into two parts. The first part introduces the blog technologies of news feed formats and publishing protocols-the building blocks. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Now that you have declared the functions to be exported, you also have to introduce them to Zend. ... This array consecutively contains all functions that are to be made available externally, with the function's name as it should appear in PHP and its name as defined in the C source. ... zend_function_entry firstmod_functions[] = { ZEND_FE(first_module, NULL) {NULL, NULL, NULL} }; You can see that the last entry in the list always has to be {NULL, NULL, NULL} . ... ZEND_FE(name, arg_types) . ...

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• Declaration of the Zend Module Block
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... TreeTop - Phylogenetic Tree Prediction . The source sequence multiple alignment could be formed from low and upper case letters. Upper case letters will show that there is a homology between correspondent fragments in alignment. ... Tree and Picture Options . Extra tree format . None Phylip Phylip (multiline) Nexus Nexus (TREES block only) Hennig86 . ... None Slanted Slanted 2 Rectangular Rectangular 2 Phylogram Unrooted Unrooted 2 . ... Alignment . Alignment example: . ...

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• AliGraf - GeneBee Graphical Alignment Help
• AliComp - GeneBee Alignment Comparison Help
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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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• Nhunt: program for nucleic acid sequence similarity search

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• SDPsite - Algorithm Format requirements
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... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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• Introduction and Overview | PARALLEL.RU - Информационно-аналитический центр по
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. As your body grows bigger . Your mind grows flowered . It's great to learn . >Cause knowledge is power!< . It's Schoolhouse Rocky . That chip off the block . Of your favourite schoolhouse . Schoolhouse Rock! . Back to main Schoolhouse Rock menu...

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• Long description illustrating absolute positioning with respect to the initial
• Long description for change bar example
• Long description for example illustrating positioning with respect to a

... Results . ... The main results of 2004 were the comparative analysis of genetic diversity of populations of saiga (Saiga tatarica). ... Molecular-genetic diversity and phylogeographic structure of moose population (Alces alces) in the different regions of European part of Russia and Ural were also studied. ... This testifies enough lengthy migrations of moose within the studied region and genetic unity of moose of Europe and Ural. ... Low genetic diversity of this species was determined. ...

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• Laboratories: Laboratory for Comparative Ethology and Biocommunication: Results

... Астронет | ... планета Астронет | ... Сверхновые . Яркая сверхновая в M82 . ... 1999 2000 2001 2002 . ... NASA Web Site Statements, Warnings, and Disclaimers . NASA Official: Jay Norris. ... Публикации с ключевыми словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . Публикации со словами: starburst galaxy - star formation - supernova - взрывы сверхновых - сверхновые типа Ia . ... NGC 6188 и NGC 6164 . ... NGC 1999: к югу от Ориона . ...

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• The Sun Rotating
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... Give an example of chemical reaction between a salt and an acid leading to the formation of another salt and a base. (1 point) [Solution] . ... Write the reactions of chromium (III) bromide with hydrogen peroxide in acidic and basic media. (2 points) [Solution] . ... In the reactions, specify the structures of all substances. (3 points) [Solution] . ... Three substances A, B, and C were mixed in the amount of three moles each. ... Example problems in chemistry for the entrance exams ( main round ) ....

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• Moscow University Chemistry Bulletin Vol. 53, No. 1, P. 8 (2012)
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• Moscow University Chemistry Bulletin Vol. 54, No. 2, P. 81 (2013)

... Each day a different image or photograph of our fascinating universe is featured, along with a brief explanation written by a professional astronomer. 2014 March 12 . The Sun Rotating . ... Explanation: Does the Sun change as it rotates? ... In the above time-lapse sequences , our Sun -- as imaged by NASA 's Solar Dynamics Observatory -- is shown rotating though the entire month of January. ... A large and active sunspot region rotates into view soon after the video starts. ... About APOD | ...

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Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... Language selection dropdown To be included where a language selection is needed, for instance in the top bar or left bar. Note: this dropdown is only shown if localization ... changed on 2005-10-14 - 22:58 by TWikiContributor . LoginName in TWiki . ... Copyright by the contributing authors. ... Note: Please contribute updates to this topic on TWiki.org at TWiki:TWiki.WebHome . ...

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• TmrnaEnglish - Projects - TWiki

CoRE Working Group C. Bormann Internet-Draft Universitaet Bremen TZI Intended status: Standards Track November 26, 2015 Expires: May 29, 2016 Block-wise transfers in CoAP: Extension for Reliable Transport (BERT) draft-bormann-core-block-bert-00 Abstract CoAP (RFC7252) is a RESTful transfer protocol for constrained nodes and networks, originally using UDP or DTLS over UDP as its transport. ... Figure 2: PUT with BERT blocks Bormann Expires May 29, 2016 [Page 5] Internet-Draft CoAP-BERT November 2015 4. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/mibs/private.mibs/scc-raid7-mib-v1-0.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc281.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc281.txt.pdf

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• Be Paranoid-- Call Sequence Checks
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