... files . ... allpy/base.py . ... 1.52 + Sequence = cls. sequence _type 1.53 + not_gap = lambda (i, char): char != - 1.54 + no_gaps = line.replace( - , ) 1.55 + sequence = Sequence (no_gaps, name , description , source) 1.56 + for i, (j, char) in enumerate(filter(not_gap, enumerate(line))): 1.57 + self[j][seq] = sequence [i] 1.58 + self. sequences .append( sequence ) 1.59 + 1.60 + @classmethod 1.61 + def from_fasta(cls, ... 2.6 2.7 - Return a dict of { sequence header: sequence body }. ...

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• allpy: 757f2a1f8732
• allpy: allpy/base.py diff
• allpy: 004c2f6c45ac

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help
• Screening by Keyword then by Similarity

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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• SAI Open Star Clusters (SAI OCL) Catalog

... При сравнении поисковых систем я обнаружила, что наибольшую степень сходства имеют две: MRS, SRS. ... D-ribose-binding periplasmic protein . swissprot-Description:D-ribose*] [swissprot-Description:-binding*]) [swissprot-Description:periplasmic*]) [swissprot-Description:protein*])| [swissprot-Description:D-ribose-binding periplasmic protein*]) [swissprot-Taxonomy:gammaproteobacteria*]) . ... swissprot-Description:D-ribose-binding periplasmic protein*] [swissprot-Taxonomy:gammaproteobacteria*]) . ...

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• sw_prot
• UniProt fields
• SwissProt fields

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• Road monitoring | Лаборатория компьютерной графики и мультимедиа

... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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• Inquiry information || Distances
• Inquiry information || Parsimony algorithm

This diagram illustrates two block boxes, one above the other, with rectangular clipping regions of different dimensions. ... Both axes depict increments of 5px. The clipping region of the first P box lies entirely within it, offset 5px from the top and left edges of the P box, and 10px from the right and bottom edges. ... The clipping region of the second P box resembles that of the first in style and position, except that the right edge is 5px to the right of the P box's right edge. ...

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• Long description illustrating absolute positioning with respect to the initial
• Long description for example illustrating positioning with respect to a
• Long description for screen shot of Windows 95 font description GUI

... 3.0.3 - 3.0.18 only, PHP 4 >= 4.0.0) imap_setflag_full -- Sets flags on messages . string imap_setflag_full ( int stream, string sequence, string flag, string options) . ... sequence numbers . Example 1. imap_setflag_full() example . mbox = imap_open("{your.imap.host:143}","username","password") or die("can't connect: ".imap_last_error()); $status = imap_setflag_full($mbox,"2,5","\\Seen \\Flagged"); print gettype($status)."\n"; print $status."\n"; imap_close($mbox); . ...

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• array_slice
• imap_clearflag_full
• imap_fetch_overview

. Nhunt: program for nucleic acid sequence similarity search . Download . User manual . Application examples . License . News . About . Authors publications . Contacts . Web interface . At present you can download poster from MCCMB'11 conference and my term work (in Russian) with description of main program algorithms. Funding: Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). Copyright 2010-2011 Yury Pekov

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Электронная библиотека Попечительского совета . ... Lord E., Wilson C. - The Mathematical Description of Shape and Form (Mathematics and Its Applications) . ... Название: The Mathematical Description of Shape and Form (Mathematics and Its Applications) . Авторы: Lord E., Wilson C. Аннотация: . ... Read more at http://ebookee.org/The-Mathematical-Description-of-Shape-and-Form_568314.html#gogoMJ62yQXMsQr2.99 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Поиск книг, содержащих Материальное описание (material description) ::
• Поиск книг, содержащих Описание эйлерово (Eulerian description) :: Электронная
• Поиск книг, содержащих Лагранжево описание (Lagrangian description) ::

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/pstext.html
• http://xray.sai.msu.ru/~ivan/gmt/man/grdproject.html
• http://xray.sai.msu.ru/~ivan/gmt/man/triangulate.html

Multichannel Flare Spectrograph . ... phi - the angle between the green vertical line passing through the solar disk image and the violet radius vector "r" of the object located at the center of the spectrograph slit- red cross. positive - clockwise, negative - counterclockwise . ... mx = x coordinate of the coelostat main mirror . ... x : carthesian solar coordinate alog axis parallel to solar equator (in arcsec) . y : carthesian solar coordinate alog axis parallel to solar axis (in arcsec) ...

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• HSFA 2 technical description Technical Details
• Anna Mel'nik - Description of the catalog

DESCRIPTION OF THE 3d SOLAR EVENT MAP . ... This date coincides with central day of the map marked by solid vertical line (in the present example - 13 July, 2000). ... The following phenomena are presented on the map: coronal holes, filaments, solar flares and the distribution of the solar magnetic field on the source surface (2.5 solar radii). The coronal holes are drawn by irregular solid curves with colors according to the day of observation (light blue, orange and violet). ...

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• 1d Map Description
• Catalogue of Space Storms
• HELIOS1 Online Data Set Selector

... Quaternary research centre, University of Novi Sad, Trg D. Obradovi?a 3, 21000 Novi Sad, Serbia and Montenegro . This short communication highlights importance of our excursion area to loess research in Europe, beginning with the work of Luigi Ferdinando Marsigli (figure 1). ... Marsigli’s observations of loess-paleosol sequences was published one century before pioneering work of von Leonard’s (1823/1824) about characterization of loess deposits (Zoeller Semmel, 2001). ...

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• An International Consensus on Calcareous Paleosol Classification
• Commission on Paleopedology Discussions
• Foundation for Agrarian Development Research - Services - Portfolio

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

20. Multiparameter Stability Theory with Mechanical Applications