... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 136 def sequences_chains ( self ): . ...

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• allpy: fb3164f03984 lib/block.py
• allpy: b2ec17578145 lib/block.py
• allpy: a016cad5f5a0 lib/block.py

Geometrical core (core) is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chains. ... Minimal core size (#aa's) . ... Alternative core new atoms (%) . ... Geometrical core is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chain. ... Each input sequences is aligned to the corresponding sequence obtained from the ATOM section of the protein chain in the PDB file. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight

... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

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• About this project
• SDP home page
• About authors ot this complex

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank
• Screening by similarity
• OUTPUT

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - SC_rate
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Chemistry, Biology Related - GRS

The method for homologous recombination detection within bacterial species Anastasia S. Kalinina1, Alexandra L. Suvorikova Vladimir G. Spokoiny 1 1,2,4 , 1,3,4 , Mikhail S. Gelfand 1,5 A.A. Kharkevich ... of sexual reproduction in bacteria, transfer of DNA fragments from cell to cell and introducing these fragments into a genome by homologous recombination plays a major role in spreading beneficial mutations through the population ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/136.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf

... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Sequence Name . ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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• Changeset 20:ee776b889df7 тАУ Tanchiki
• Changeset 28:4ef6336d1707 тАУ Tanchiki
• Changeset 8:cda6324b8518 тАУ Cyclyc Cell Automata

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Поиск книг, содержащих General position :: Электронная библиотека
• Krettek С., Aschemann D. - Positioning Techniques in Surgical Applications:
• Moeller T.B. - Magnetic Resonance Imaging, Parameters and Positioning ::

Mustela . On a taxonomic position of the weasel (Carnivora, Mustela ) from the Cheju Island (South Korea) . ... The weasel from Cheju Island (formerly в?' Quelpart Island), which is situated in Korean Strait south of the coast of South Korea, was described as a separate species Lutreola quelpartis Thomas, 1908. ... Abramov A.V. 2000b. The taxonomic status of the Japanese weasel, Mustela itatsi (Carnivora, Mustelidae) // Zoologicheskii Zhurnal. ... A Pictorial Guide to the Mammals of Japan. ...

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• Taxonomic position of Eptesicus bobrinskoi - abstract
• Russian Journal of Theriology

... Полная версия этой страницы: PhD positions in Switzerland . Студенческий форум Физфака МГУ > Физфак и учеба > Аспирантура . ... 2 PhD positions in multiscale modeling of cancer tumor induced microcirculation . ... The students will be enrolled in the graduate program in the Faculty of Informatics, and will work with Prof. Igor Pivkin on multiscale modeling of tumor induced microcirculation. ... Multiscale Modeling of Tumor Microcirculation . ... All PhD positions have a starting date January 2012. ...

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• PhD positions in Switzerland - Студенческий форум Физфака МГУ
• Студенческий форум Физфака МГУ > Ph.D and Post-Doc positions in chemical
• Студенческий форум Физфака МГУ > PhD position in Sheffield

... Форумы > Аспирантура > Тема . Автор темы ter . Форумы Список тем Новая тема . ... PhD positions in logic and AI, Vancouver (Canada) . PhD positions are available in the area of logic-based artificial intelligence. ... interested in logic (or discrete mathematics) and its uses for practical problem solving. ... Online application information is available at: . ... Следующая тема Предыдущая тема . ... Сайт работает с 29.08.2000, Copyright 2000 2011 MMOnline.Ru and MMForce.Net, . ...

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• MMOnline | Форумы | Аспирантура | PhD position in the University of Florida
• MMOnline | Форумы | Аспирантура | Phd positions at the Max-Planck Institute for
• MMOnline | Форумы | Аспирантура | PhD position at the University of Geneva,

... Ярмарка вакансий и стажировок для студентов и выпускников вузов . ... University of Groningen, The Netherlands . PhD Position available . ... PhD Position in Theoretical Chemistry . ... She is considered to be one of top 5 universities in Europe for research in Materials Science, Chemistry, Space Science, Microbiology, and Environment/Ecology. ... In 1993, the MSCplus was accredited by the Royal Netherlands Academy of Arts and Sciences (KNAW) as a leading Research School in Materials Science. ...

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• A Ph.D. position, 2006, Finland / Вакансии / Physcareer.ru
• Office Manager (temporary position 09.07.07-23.07.07 / Вакансии / Physcareer.ru

... Next . PHP 3 <= 3.0.18, PHP 4 >= 4.0.0) gzseek -- Seek on a gz-file pointer . int gzseek ( int zp, int offset) . Sets the file position indicator for the file referenced by zp to offset bytes into the file stream. ... If the file is opened for reading, this function is emulated but can be extremely slow. If the file is opened for writing, only forward seeks are supported; gzseek then compresses a sequence of zeroes up to the new starting position. ... See also gztell() and gzrewind() . ...

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• fseek
• String functions

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• Space position
• Calculation of Evolutionary Tracks
• Main-sequence stars (stage I)

... Кафедра общей экологии Биологического факультета МГУ им. М.В. Ломоносова и . ... Активные темы Список участников Поиск по форуму Помощь . ... Экологический Форум - Фундаментальная Экология : Предложения и замечания по сайту . Тема: to become in a position to those individu . ... Переход на форум -- Выберите форум -- О сайте "Фундаментальная экология" - Предложения и замечания по сайту Научные семинары - Научные семинары . Вы не можете публиковать новые темы в этом форуме . ...

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• Экологический Форум - Фундаментальная Экология: I also trace their position
• Экологический Форум - Фундаментальная Экология: the about the that positioning,
• Экологический Форум - Фундаментальная Экология: luxury customers, positioning,

... Credit Copyright: Yuichi Takasaka / TWAN / www.blue-moon.ca Explanation: Recorded on April 15th, this total lunar eclipse sequence looks south down icy Waterton Lake from the Waterton Lakes National Park in Alberta, Canada, planet Earth. ... Around 270 BC, the Greek astronomer Aristarchus also measured the duration of lunar eclipses - though probably without the benefit of digital clocks and cameras. ... Publications with keywords: lunar eclipse - Aristarchus . ... The Moon Entering Earth s Shadow ....

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• Journal "Peremennye Zvezdy"
• Kalamalka Lake Eclipse
• Total Lunar Eclipse over Waterton Lake

Contents] [Prev page] [Next page] [Index] . ... Positioning HTML Content Using Styles . Positioning HTML Content Using the <LAYER> Tag . ... Absolute Positioning . ... Creating Positioned Blocks of Content Dynamically . Writing Content in Positioned Blocks . ... Positioning the Flower Layers . Positioning and Moving the Fish and Poles . Defining the onLoad Handler for the BODY Element . ... Adding Another Layer to Contain the Reverse Fish Image . ... The Initialization Functions . ...

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• Long description for example illustrating positioning with respect to a
• Long description for example illustrating absolute positioning
• Long description illustrating absolute positioning with respect to the initial

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... This section presents the results of the application of the methodology described in the previous section to real EEG signal. ... Fig. 7.1. Detection algorithm adapted for the EEG analysis . The EEG (a) was filtered in the alpha band (bandpass 7.5--12.5 Hz) (b) and then the amplitude squared (c); the result is the sequence from which the subintervals are cut out at further steps. ...

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• Change-points in EEG components with different pattern
• Analysis of change-point synchronization in multi-channel EEG
• Other prospects of the change-point based analysis