... 1.1 --- a/ allpy /base.py Tue Feb 01 23:08:08 2011 +0300 1.2 +++ b/ allpy /base.py Wed Feb 02 21:28:18 2011 +0300 1.3 @@ -158,34 +158,31 @@ 1.4 If sequence is too short, pad it with gaps on the right. 1.5 1.6 self .sequences.append( sequence ) 1.7 - for i, monomer in enumerate( sequence ): 1.8 - self ._ column_at (i)[ sequence ] = monomer 1.9 + self ._pad_to_width(len( sequence )) 1.10 + for column , ... Return self. 1.51 @@ -350,9 +347,12 @@ 1.52 not_gap = lambda (a,b): a != ...

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• allpy: allpy/base.py diff
• allpy: 0857aa872850
• allpy: e7649feb396e allpy/block.py

Geometrical core (core) is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chains. ... Minimal core size (#aa's) . ... Alternative core new atoms (%) . ... Geometrical core is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chain. ... Each input sequences is aligned to the corresponding sequence obtained from the ATOM section of the protein chain in the PDB file. ...

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Электронная библиотека Попечительского совета . ... Niederreiter H. - Random number generation and quasi-Monte Carlo methods . ... Название: Random number generation and quasi-Monte Carlo methods . ... Tremendous progress has taken place in the related areas of uniform pseudorandom number generation and quasi-Monte Carlo methods in the last five years. ... Nonuniform random numbers 162 . ... random number generation 3 161 . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Smarandache F. - Sequences of Numbers Involved in Unsolved Problems ::
• Cohen L.W., Ehrlich G. - The Structure of the Real Number System :: Электронная
• Cusick T.W. - Stream Ciphers and Number Theory :: Электронная библиотека

... Run program . User's guide . Launching program . Input data format . ... Selecting the number of correlated pairs . ... In order to run thr program one needs Java 5.0 environment. ... At the end of computations one will be asked to review the selected number of correlated pairs. ... Note: One may redefine the number of correlated pairs by selecting the 'Edit' -> 'redefine correlated pairs number' menu item. Correlated pairs of positions are presented as a colored matrix, the heatmap. ...

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• SDPsite - Algorithm Format requirements
• RNA Alignment
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SVETKA, a program for analysis of different alignments . Back to the help page . ... Such a feature can look like " Leucine in the position 362 of the alignment of the entire family " and can, in many cases, be a "decision rule" to distinguish sequences from two sides of a tree branch. ... Comparing the alignment with an input tree (the tree may be entered by the user or reconstructed with the WPGMA algorithm), the program detects supporting positions of the alignment for every branch the tree. ...

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• Inquiry information || Parsimony algorithm
• Homeodomain numeration assumed
• Example of supporting positions

... Advanced Screening by Similarity . ... Simple Query Form . Protein databanks: . ... Motif's length . threshold . Motif's power threshold . Alignment's power . ... of query sequence . End position of query sequence . ... Threshold of motif's . ... Threshold of alignment's . ... DNA/RNA Blosum 30 Blosum 50 Blosum 62 Dayhoff Johnson . ... Yes No . ... Sequence Alignment . ... Query sequence name . Enter or Paste here your Sequence without name OR Alignment . ...

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• Screening of pattern or alignment against PROTEIN databank
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Detection of short size mutations and copy number alterations in ultra-deep targeted sequencing data Valentina Boeva, Emmanuel Barillot, Institut Curie, valentina.boeva@curie.fr Jean-Francois Laes OncoDNA, jf.laes@oncodna.com The emergence of the amplicon sequencing technique, which followed whole exome sequencing, promises a revolution in cancer diagnostics and treatment. ... Visualization of the typical configuration of read mappings (with Integrative Genomics Viewer). ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/99.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/4.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf

... Number nine will put you on the spot. ... Naughty number nine. ... Is that it's one less than ten. You see, nine is the same as ten minus one. ... I mean, eight times nine is 80 minus eight, . And seven times nine is 70 minus seven, . And six times nine is 60 minus six. ... With naughty number nine. ... One times nine is nine, and two times nine is 18. Mean ol' number nine. ... Eight times nine is 72, and nine times nine is 81, . ... With naughty, nasty, mean ol' number nine. ...

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• Three Is A Magic Number
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... The numbers of three types of compact binaries containing accreting NSs and BHs, which are most interesting from the point of view of their observational appearances, have been calculated as a function of time: i) X-ray transient source containing a NS in an eccentric orbit around a main sequence Be-star (the observed prototype: A0535+26), ii) BH The evolution of the selected types of X-ray binaries during the first 10 million years after the starburst onset is presented in Fig. ...

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SIMATH . SIMATH is a computer algebra system, especially for number theoretic purposes. ... http://emmy.math.uni-sb.de/~simath/index.html . ... Sun 3/140 under SunOS 3.4, Sun 3/80 under SunOS 4.0.3, Sun SPARCstation under SunOS 4.1.x, HP 9000 series 700 under HP-UX 9.0x, Apollo DN 3000 under SR10.1, Apollo DN 4500 under SR10.1, Apollo DN 10000 under SR10.3, SGI Indigo under IRIX 4.0.5F, SGI Challenge under IRIX 5.1.1.2. and Linux 1.1.xx . ... SAL Home | Mathematics | Number Theory . ...

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... IMP SITE HOST NETWORK SCHEDULED NUMBER NAME NUMBER HOST ADDRESS INSTALLATION ------ ---- ------ ---- ------- ------------ 1 UCLA 0 SIGMA-7 1 1 IBM 360/91 65 2 SRI 0 PDP-10 (NIC) 2 1 PDP-10 (Al) 66 3 UCSB 0 IBM 360/75 3 4 UTAH 0 PDP-lO 4 5 BBN 0 DDP-516 5 ) See Note 1 1 PDP-10 (A) 69 ) 2 PDP-1O (B) 133 Note 1: Prior to September 1, 1971 the BBN PDP-1O (A) will be Host number 0 (network address 5) and the BBN DDP-516 will be Host number 1 (network address 69). ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/rfc946.txt

... Traditionally, UUCP talks of dialers rather than modems, because in earlier times, it was usual practice to have one (expensive) automatic dialing device serve a whole bank of modems. ... Similar to the login chat, it consists of a sequence of strings uucico sends to the dialer and the responses it expects in return. ... When uucico detects a chat-fail string while executing the modem chat, it aborts the call, and logs the error message in the UUCP log file. ...

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. In the current work the variability of the number of marginal flowers in inflorescences of 11 plant species from Compositae family depending on light and humidity level of the population and connection between the number of marginal flowers with other morphological characteristics of researched plants were studied. [full Russian text] . To the main page

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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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... Accepting Arguments . ... PHP's implementation of variable arguments in fsockopen(). pval ** args [5]; int *sock=emalloc(sizeof(int)); int *sockp; int arg_count = ARG_COUNT (ht); int socketd = -1; unsigned char udp = 0; struct timeval timeout = { 60, 0 }; unsigned short portno; unsigned long conv; char *key = NULL; FLS_FETCH(); if ( arg_count 5 || arg_count 2 || zend_get_ parameters _array_ex( arg_count , ... Old way of retrieving arguments (deprecated) . ... Accessing Arguments ...

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• Floating point numbers
• number_format
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fdnaml Estimates nucleotide phylogeny by maximum likelihood Standard (Mandatory) qualifiers : [-sequence] seqsetall File containing one or more sequence alignments [-intreefile] tree Phylip tree file (optional) [-outfile] outfile [*.fdnaml] Phylip dnaml program output file Additional (Optional) qualifiers (* if not always prompted): -ncategories integer [1] Number of substitution rate categories ( Integer from 1 to 9) * - ...

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• http://kodomo.cmm.msu.ru/~vlada/term3/megb.txt
• http://kodomo.cmm.msu.ru/~manya/term3/resmegablast.txt
• http://kodomo.cmm.msu.ru/~sds/Supplement_materials/term3/block1/dis16_1.txt

Skip to main content . ... Main courses . Extra courses . ... Course . ... 119992 Moscow, GSP-1, Leninskie Gory, MSU, mechanics and mathematics department, OPU, Room 13-14 . ...

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• Seminars of the department | Department: General Problems of Control. Faculty
• Rozhdestvenskiy Aleksey Valeryevich | Department: General Problems of Control.

Russian . Next: High resolution DACs numbers Up: Server configuration Previous: HTTP server configuration Contents Index . A tab labeled DACs allow to configure addresses of DACs, that are responsible for: piezomanipulator movement coordinates, tunneling gap voltage, stepper motor control, modulation frequency in RAFM mode and sample temperature control. Russian . Next: High resolution DACs numbers Up: Server configuration Previous: HTTP server configuration Contents Index Filonov 2005-02-04

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• High resolution DACs numbers
• Sample landing preferences
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... Version Number . Up: Version 1.2 of MPI Next: MPI-1.0 and MPI-1.1 Clarifications Previous: Version 1.2 of MPI . ... The ``version'' will be represented by two separate integers, for the version and subversion: . ... define MPI_VERSION 1 #define MPI_SUBVERSION 2 in Fortran, . INTEGER MPI_VERSION, MPI_SUBVERSION PARAMETER (MPI_VERSION = 1) PARAMETER (MPI_SUBVERSION = 2) . ... MPI_GET_VERSION( version, subversion ) . ... int MPI_Get_version(int *version, int *subversion) . ... Центры . ...

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... Intermittency of vector fields and natural random number generators" . Kalinin A.O. and Sokoloff D.D. Growth of Jacobi fields on geodesic lines over a 2D manifold with Gaussian curvature as a random process is considered. ... Keywords: intermittency, vector field, Jacobi equation, random numbers, Lyapunov exponent. ... Kalinin A.O. тАУ Lomonosov Moscow State University, Faculty of Physics; Leninskie Gory, Moscow, 119991, Russia; Student, e-mail: kalinanton@me.com . ...

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• Composition of infinitary structures
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• "Enclosure structures of equal level line fields in the gradient filling