... Initial commit with the lib modules . ... lib/block.py lib/monomer.py lib/project.py lib/sequence.py . ... lib/monomer.py . ... lib/sequence.py . ... Sequences don't contain gaps 3.22 + - see sequence .py module 3.23 + * alignment -- dict 3.24 + { Sequence object :[ Monomer object ,None, Monomer object ]} 3.25 + keys are the Sequence objects, values are the lists, which 3.26 + contain monomers of those sequences or None for gaps in the 3.27 + corresponding sequence of 3.28 + ...

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• allpy: f8bd7c469fcf
• allpy: 3d40d7b9a123 lib/project.py
• allpy: 9b91b49b9ef0 lib/project.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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• ConClus

... PHP 4 >= 4.0.5) yaz_ccl_conf -- Configure CCL parser . int yaz_ccl_conf ( int id, array config) . This function configures the CCL query parser for a target with definitions of access points (CCL qualifiers) and their mapping to RPN. ... Each index of the array config is the name of a CCL field and the corresponding value holds a string that specifies a mapping to RPN. The mapping is a sequence of attribute-type, attribute-value pairs. ... CCL configuration . ... yaz_ccl_parse ...

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• checkdnsrr
• getmxrr
• yaz_error

Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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• Inquiry information || Distances
• Inquiry information || Parsimony algorithm
• SDPpred

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• Link Control Options
• A Description of NNTP

... Block DNA GyrB" shows the score of pairs Lys|Lys, Lys|Arg and Lys|Ser respectively, from a block constituted by amino acid sequences from the same protein (DNAGyraseB), but from different organisms, for example GYRB_ECOLI, GYRB_YERPE (yeast), GYRB_HEINE, GYRB_MUSC (mouse). Block 200 illustrates the score of these pairs from 200 different blocks constituted by sequences from differnet organisms. ... Between the values of single BLock the differences are smaller than between the values of Blosum62. ...

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• Множественное выравнивание.

... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.8 Services Help
• GeneBee BLAST 2.2.22+ Services Help
• Genebee Predicted Annotation

HMMER . The HMMER hidden Markov model software package and other software for large-scale genome analysis using probabilistic models of proteins and RNAs, from Sean Eddy's lab at Washington University, St. Louis USA. HMMER -- Hidden Markov models for sequence profile analysis. ... COVE -- an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - GRS
• authcert - DES validation program
• Zen: CASDB

Sequence alignment of non-superposable beta-sheets Evgeniy Aksianov Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia, evaksianov@gmail.com Andrey V. Alexeevski Belozersky Institute, Lomonosov Moscow State University, Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia aba@belozersky.msu.ru Protein 3D structures usually are more conserved than their sequences. ... Beta-strands are contained in sheet map rows. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/23.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/42.pdf

This diagram shows how the 'vertical-align' properties on cells combine to determine the height of the row containing the cells. The diagram also illustrates the meaning of some values of 'vertical-align' that apply to table cells: baseline, top, bottom, and middle. The diagram shows a row of five (labeled) table cells of varying heights and alignments. ... The first cell is aligned with the row baseline and extends to just below the row top. ...

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• Long description for screen shot of Windows 95 font description GUI
• Not so well documented Device Helpers in OS/2
• Long description for example showing caption above a table

You are here: Foswiki > System Web > AutoViewTemplatePlugin (10 Apr 2011, ProjectContributor ) E dit A ttach . ... This plugin sets the VIEW_TEMPLATE and EDIT_TEMPLATE variables according to a corresponding form definition. So when you attach a new form to a topic, this plugin will enable the corresponding view/edit template automatically. ... section . ... The mode the plugin uses for defining templates. exist for deriving the template name from the form name . ... Plugin Author: . ... System . ...

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• VarENCODE < System < Foswiki

... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

Each row in the Particles Table describes a particle - anti-particle pair. ... 2*Spin for a doubled particle spin: 0 for scalar, 1 for spinor and 2 for vector particles. ... In this case the anti-particle "A+" is transformed by conjugated representation. ... Aux for an auxiliary field which allows to modify particle propagators. ... spin 0 case: . ... Zero mass vector particle must be marked as a gauge one using the Aux field (see below). ... is permitted for vector ( 2*spin=2 ) particle. ...

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• fcp:rest:jobschema [THEP]
• rfbr:rest:jobschema [THEP]

... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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• x264 codec improvement | Лаборатория компьютерной графики и мультимедиа
• Road monitoring | Graphics and Media Lab
• Road monitoring | Лаборатория компьютерной графики и мультимедиа

... In ascii, it is represented Sung [Page 1] RFC 1792 TCP / IPX MIB April 1995 -- as hex digits, as in: nnnnnnnn:mmmmmmmmmmmm IpxAddress ::= OCTET STRING (size (10)) -- TCP / IPX MIB object idenfifiers novell OBJECT IDENTIFIER ::= { enterprises 23 } mibDoc OBJECT IDENTIFIER ::= { novell 2 } tcpx OBJECT IDENTIFIER ::= { mibDoc 29 } tcpxTcp OBJECT IDENTIFIER ::= { tcpx 1 } tcpxUdp OBJECT IDENTIFIER ::= { tcpx 2 } -- the TCP / IPX Connection table -- The TCP / ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc1792.txt.pdf
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.050.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

19. : API Help

20. CDFE - Centre for Photonuclear Experiments Data - Home page