... Tue, 26 Oct 2010 21:53:23 +0400 . boris . idea implemented: pdb and sec_str data moved from monomer to sequence . ... boris (netbook) . ... Mon, 25 Oct 2010 13:30:11 +0400 . ... Sun, 24 Oct 2010 23:12:15 +0400 . ... lib: superimpose comleted, pdb_save in progress.. ... sequence.pdb_auto_add . ... allpy_pdb: new fasta id parsing function . Sat, 23 Oct 2010 12:57:07 +0400 . ... Fri, 22 Oct 2010 17:16:37 +0400 . ... Thu, 21 Oct 2010 15:22:36 +0400 . ... Wed, 20 Oct 2010 23:33:29 +0400 . ...

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... annotate . ... Automated merge with ssh://kodomo/petri_dish . ... Smirnova@1 . ... 2 def __init__ ( self , num , bacteria , radius , delta , bact_r , full_lifetime ): . ... 3 self . ... bacteria = bacteria . ... delta = delta . ... bact_r = bact_r . ... 10 def step ( self , delta_t , env ): . ... 11 for bact in self . bacteria : . ... 12 bact . lifetime -= delta_t . ... bacteria , delta_t , self . ... delta , self . bact_r , self . ... collision ( collide , delta_t , self . ...

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... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• Example of supporting positions
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Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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The QGManager class provides one-dimensional geometry management. ... void  setBorder  ( int b )  . ... bool  add  ( QChain * destination, QChain * source, int stretch = 0 )  . bool  addWidget  ( QChain *, QWidget *, int stretch = 0 )  . bool  addSpacing  ( QChain *, int minSize, int stretch = 0, int maxSize = unlimited )  . bool  addBranch  ( QChain * destination, QChain * branch, int fromIndex, int toIndex )  . ... Widgets are organized in chains, which can be parallel or serial. ...

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... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...

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The Isaac Newton Institute (Instituto Isaac Newton) for astronomical research (INI) was founded in 1978 by Gonzalo Alcaino. The main office is located in the eastern outskirts of Santiago (Chile). ... The Moscow branch was the first one established outside Chile. ... Besides the above named branches, the Chilean staff of the Isaac Newton Institute is involved in collaboration with astronomers of the Observatory of Rome in several research projects using data secured from telescopes in Chile. ...

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PUZZLE . PUZZLE is an application to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm (quartet puzzling) that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. ... All model parameters including rate heterogeneity can be estimated from the data by maximum likelihood. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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-matic linux-info linux-mod multilib readme.gentoo-r1 toolchain-funcs AUFS_VERSION= ${PV%%_p*} # highest branch version PATCH _MAX_VER=19 # highest supported version KERN_MAX_VER=20 # lowest supported version KERN_MIN_VER=18 DESCRIPTION= An entirely ... PATCH_BRANCH} ${module_branch} || die combinediff \ ${PN}-base.patch ${PN}-standalone.patch > "${T}"/combined-1.patch combinediff \ "${T}"/combined-1.patch ${PN}-mmap.patch \ > ${PN}-standalone-base-mmap-combined.patch if ! ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... still have difficulty on line ending at end of sequences, consequence of doing a line based diff . rcstext ::= admin {delta}* desc {deltatext}* admin ::= head {num}; { branch {num}; } access {id}*; symbols {sym : num}*; locks {id : num}*; {strict ;} { comment {string}; } { expand {string}; } { newphrase }* delta ::= num date num; author id; state {id}; branches {num}*; next {num}; { newphrase }* desc ::= desc string deltatext ::= num log string { newphrase }* text string num ::= {digit | ... num | ...

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... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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Starting from the PC GAMESS version 6.3, the support of the new proprietary parallel mode communication interface (which is called P2P interface) was implemented as the part of PC GAMESS. ... The PC GAMESS/Firefly specific parallel MP2 energy and energy gradient method=1 modules supports P2P communication model. ... The dynamic library in which the P2P interface is implemented. ... Starting from the PC GAMESS v. 6.4, the DLB (dynamic load balancing) functionality was added to P2P interface. ...

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... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Developer Documentation . ... In general, a hook function is one that Apache will call at some point during the processing of a request. ... Use the AP_DECLARE_HOOK macro, which needs to be given the return type of the hook function, the name of the hook, and the arguments. For example, if the hook returns an int and takes a request_rec * and an int and is called do_something , then declare it like this: . ...

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... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Developer Documentation . ... In general, a hook function is one that Apache will call at some point during the processing of a request. ... Use the AP_DECLARE_HOOK macro, which needs to be given the return type of the hook function, the name of the hook, and the arguments. For example, if the hook returns an int and takes a request_rec * and an int and is called do_something , then declare it like this: . ...

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Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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... News . ... 32-bit Microcontroller Programming . Microcontroller Control of Motors . Second-year students classes . ... Parallel Programming . ... Microcontroller Programming . ... Microcontroller-related . ... Serguey Elizarov . Serguey Zapunidi . ... Alexander Karabutov . ... Serguey Yakovlev . ... We sincerely wish you a Happy New Year and Merry Christmas! We hope that this year has been for you a year of new achievements. ... Happy New Year 2016! ... Hits . ... Written by Pavel . ...

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... Previous message: [Comphep-common] Re: $COMPHEP/genEvents . Next message: [Comphep-common] Re: a bug in comphep b76i (windows version) . Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] . Dear COMPHEP experts, Is it possible to evaluate width and branching ratios for a 1->2 process (for example ~1+ -> 2*x) in batch mode? I need these values as inputs to perform further batch calculations, Thanks a lot for your help. ...

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... Geography of World Economy . ... Recreational Geography and International Tourism . ... Physical Geography and Landscape Science . ... About Faculty . ... Research laboratories . ... Type of field courses . ... Specialists of the same profile graduate from the branches of the Faculty, located in Sevastopol (Ukraine) and Astana (Kazakhstan). ... International programme in Natural Resource Management and Law offers a unique combination of Natural and Environmental Sciences and Science of Law. ...

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