... annotate . ... 2 import data.codes . dendik@1100 . 3 from data.genetic_code import standard_dna_code . ... 14 by_name = {} . ... 17 class Sequence ( base . ... 21 """Return a new sequence, reverse-complement to self. dendik@930 . ... 23 Name of the sequence is name of self with apostrophe added. dendik@930 . ... 35 def translated ( self , code = None , name = None , description = None , source = None ): . ... 38 `code` is a dict of triplet of dna `code1`s -> aminoacid `name`. dendik@1100 . ...

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• allpy: allpy/base.py diff
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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... Wed, 15 Dec 2010 16:21:26 +0300 . ... Added reasonable binding for mousewheel to Scroll widget . Tue, 14 Dec 2010 17:11:15 +0300 . Yashina Ksenia . Automated merge with ssh://kodomo.fbb.msu.ru/petri_dish . ... added menu bar . ... Mon, 13 Dec 2010 21:26:28 +0300 . ...

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Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• FASTA format description

Protein 3D architectures and structural motifs: automated annotation E.A. Aksianov1, A.V. Alexeevski 1 2 1,2 Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia evaksianov@gmail.com, aba@belozersky.msu.ru Description of a protein 3D structure in terms of structural domains, architecture, topology and structural motifs is a hard problem. ... The core is extended by small -sheet (unit_3). ...

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... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

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