... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

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• About authors ot this complex
• About this project
• Example of supporting positions

Geometrical core (core) is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chains. ... Minimal core size (#aa's) . ... Alternative core new atoms (%) . ... Geometrical core is a maximal set of alignment positions such that C atoms in these positions are disposed similarly in ALL input protein chain. ... Each input sequences is aligned to the corresponding sequence obtained from the ATOM section of the protein chain in the PDB file. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred

... allpy/config.py: change min_width=4 previous value (min_width=3) was considered to be too low, that caused a lot of False Positives . ... 2 from allpy import dna . ... 6 def my_column_mark ( column , threshold ): . ... 8 count = {} . ... 11 count [ code ] = count . ... 12 for code in count : . ... 14 return "+" . ... 25 def find_runs ( markup ): . ... 33 plus_positions = [] . ... 46 raise Exception ( "No blocks in alignment" ) . ... 66 for column in alignment . ... 68 markup = alignment . ...

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• allpy: 2ede0318ff95 test/usecase2.py
• allpy: 6a50c2042d0e test/usecase2.py
• allpy: a3df15a42f9d test/usecase2.py

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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The method for homologous recombination detection within bacterial species Anastasia S. Kalinina1, Alexandra L. Suvorikova Vladimir G. Spokoiny 1 1,2,4 , 1,3,4 , Mikhail S. Gelfand 1,5 A.A. Kharkevich ... of sexual reproduction in bacteria, transfer of DNA fragments from cell to cell and introducing these fragments into a genome by homologous recombination plays a major role in spreading beneficial mutations through the population ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/136.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/4.pdf

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening by similarity
• Screening of pattern or alignment against PROTEIN databank
• Genebee Predicted Annotation - Advanced

... MAST - Motif Alignment and Search Tool . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - SC_rate
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Chemistry, Biology Related - GRS

Mustela . On a taxonomic position of the weasel (Carnivora, Mustela ) from the Cheju Island (South Korea) . ... The weasel from Cheju Island (formerly в?' Quelpart Island), which is situated in Korean Strait south of the coast of South Korea, was described as a separate species Lutreola quelpartis Thomas, 1908. ... Abramov A.V. 2000b. The taxonomic status of the Japanese weasel, Mustela itatsi (Carnivora, Mustelidae) // Zoologicheskii Zhurnal. ... A Pictorial Guide to the Mammals of Japan. ...

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• Taxonomic position of Eptesicus bobrinskoi - abstract
• Russian Journal of Theriology

... Форумы > Аспирантура > Тема . Автор темы ter . Форумы Список тем Новая тема . ... PhD positions in logic and AI, Vancouver (Canada) . PhD positions are available in the area of logic-based artificial intelligence. ... interested in logic (or discrete mathematics) and its uses for practical problem solving. ... Online application information is available at: . ... Следующая тема Предыдущая тема . ... Сайт работает с 29.08.2000, Copyright 2000 2011 MMOnline.Ru and MMForce.Net, . ...

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• MMOnline | Форумы | Аспирантура | PhD position in the University of Florida
• MMOnline | Форумы | Аспирантура | Phd positions at the Max-Planck Institute for
• MMOnline | Форумы | Аспирантура | PhD position at the University of Geneva,

... Кафедра общей экологии Биологического факультета МГУ им. М.В. Ломоносова и . ... Активные темы Список участников Поиск по форуму Помощь . ... Экологический Форум - Фундаментальная Экология : Предложения и замечания по сайту . Тема: to become in a position to those individu . ... Переход на форум -- Выберите форум -- О сайте "Фундаментальная экология" - Предложения и замечания по сайту Научные семинары - Научные семинары . Вы не можете публиковать новые темы в этом форуме . ...

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• Экологический Форум - Фундаментальная Экология: luxury customers, positioning,
• Экологический Форум - Фундаментальная Экология: Mark non-essential. considered
• Экологический Форум - Фундаментальная Экология: to be in a position to the

... Next . PHP 3 <= 3.0.18, PHP 4 >= 4.0.0) gzseek -- Seek on a gz-file pointer . int gzseek ( int zp, int offset) . Sets the file position indicator for the file referenced by zp to offset bytes into the file stream. ... If the file is opened for reading, this function is emulated but can be extremely slow. If the file is opened for writing, only forward seeks are supported; gzseek then compresses a sequence of zeroes up to the new starting position. ... See also gztell() and gzrewind() . ...

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• fseek

... Ярмарка вакансий и стажировок для студентов и выпускников вузов . ... University of Groningen, The Netherlands . PhD Position available . ... PhD Position in Theoretical Chemistry . ... She is considered to be one of top 5 universities in Europe for research in Materials Science, Chemistry, Space Science, Microbiology, and Environment/Ecology. ... In 1993, the MSCplus was accredited by the Royal Netherlands Academy of Arts and Sciences (KNAW) as a leading Research School in Materials Science. ...

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• A Ph.D. position, 2006, Finland / Вакансии / Physcareer.ru
• Office Manager (temporary position 09.07.07-23.07.07 / Вакансии / Physcareer.ru

... Hale Bopp: A Continuing Tail . ... Credit: Guido Pizarro, ESO Explanation: Where is Hale-Bopp now? ... After a swing through the outer solar system and the Oort cloud , Hale-Bopp will pass through the inner solar system again ... around the year 5400. ... Publications with keywords: tail - Comet Hale-Bopp . Publications with words: tail - Comet Hale-Bopp . ... Comet Holmes Grows a Tail . Comet Hale-Bopp Over Val Parola Pass . Comet Hale Bopp Over the Superstition Mountains . ...

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• Астронет > Hale Bopp: A Continuing Tail
• Waterton Lake Eclipse
• Kalamalka Lake Eclipse

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• Space position
• Calculation of Evolutionary Tracks
• Main-sequence stars (stage I)

... Krettek С., Aschemann D. - Positioning Techniques in Surgical Applications: Thorax and Heart Surgery - Vascular Surgery - Visceral and Transplantation Surgery - Urology - Surgery .. Pediatric Surgery - Navigation/ . ... Название: Positioning Techniques in Surgical Applications: Thorax and Heart Surgery - Vascular Surgery - Visceral and Transplantation Surgery - Urology - Surgery .. ... Авторы: Krettek С., Aschemann D. Аннотация: . ...

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• Althaus E. - A branch-and-cut algorithm for multiple sequence alignment ::
• Bilaniuk S. - A Problem Course in Mathematical Logic (vol. 2) :: Электронная
• Moeller T.B. - Magnetic Resonance Imaging, Parameters and Positioning ::

Contents] [Prev page] [Next page] [Index] . ... Positioning HTML Content Using Styles . Positioning HTML Content Using the <LAYER> Tag . ... Absolute Positioning . ... Creating Positioned Blocks of Content Dynamically . Writing Content in Positioned Blocks . ... Positioning the Flower Layers . Positioning and Moving the Fish and Poles . Defining the onLoad Handler for the BODY Element . ... Adding Another Layer to Contain the Reverse Fish Image . ... The Initialization Functions . ...

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• Long description for example illustrating positioning with respect to a
• Long description illustrating absolute positioning with respect to the initial
• Long description for example illustrating absolute positioning

... Пользователи -General- Common Current University Society Study Diaspora FAQ Real Estate -Technical- Development Hard&Soft Network Mobile -Market- Market Services Job -Hobby- Behemoth Health Love&Sex Еда Media Games Auto&Moto Sport Hobby Flood Zone -Servant- Alternative Forums Forum -Garbage- Revolution Garbage Private . ... k/a] Cost manager - startup position . ... Re: [k/a] Cost manager - startup position [ re: LadyDark ] . ... Re: [k/a] Cost manager - startup position [ re: gerytch ] . ...

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• PhD Position University of Rouen - Public forum of MSU united student networks
• PhD Student Position in Near-field Optics - Public forum of MSU united student
• Position for PhD study in Applied Mathematics/Math-Biology - Public forum of

... Investigations of the electrical properties of PbSnTeS, PbSnTeSe, and PbSnSeS solid solutions confirmed an earlier hypothesis that the positions of the tin atoms were off-center and that the tunnel motion of these atoms were suppressed in the anion sublattice. ... Other works on off-center impurities ...

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