... lib::project::muscle_align project::save_fasta sequence::operator== fixes test -- alignment done . ... 33 Project(sequences, alignment) -> new Project with sequences and . ... 35 Project(fasta_file) -> new Project, read alignment and sequences . ... sequences , self . ... 99 >>> sequences,alignment=project.Project.from_fasta(open("test.fasta")) . ... 147 max_length = max ( len ( sequence ) for sequence in sequences ) . ... alignment [ sequence ] = sequence . ... 179 sequences , alignment = Project ....

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• allpy: fb3164f03984 lib/block.py
• allpy: b2ec17578145 lib/block.py
• allpy: 757f2a1f8732

... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

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• About this project
• SDP home page
• Inquiry information || Parsimony algorithm

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• Geometrical core

This diagram illustrates the effects of absolutely positioning a box ("inner") with respect to a containing block established by a relatively positioned ancestor ("outer"). ... The "inner" box has been positioned relative to the top and left edges of the "outer" element's first inline box. ... The reference edges for positioning the "inner" box are indicated in the diagram by thick dashed lines. ... 1 Beginning of body contents.| ... 4 [(+200, -100)] 5 Inner 6 contents. ... Inner contents" is blue. ...

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• Long description illustrating absolute positioning with respect to the initial
• Long description for example illustrating absolute positioning
• Long description of example illustrating table row height calculations and

Dataset and Motifs . ... Motif Diagrams . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/fitcircle.html
• http://xray.sai.msu.ru/~ivan/gmt/man/blockmode.html
• http://xray.sai.msu.ru/~ivan/gmt/man/blockmean.html

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Annotation title . General options . ... DotHelix options . ... threshold (4 to 50) . ... DNA/RNA Dayhoff Johnson Blosum 30 Blosum 50 Blosum 62 Pam 60 Pam 120 Pam 250 Gonnet 120 Gonnet 250 Gonnet 350 . Supermotif's options . ... Maximum number . ... FT fragment picture options . Max number of FT . ... Other options . ...

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• RNA secondary structure prediction
• FASTA format description
• Screening by similarity

... Next . PHP 3 <= 3.0.18, PHP 4 >= 4.0.0) gzseek -- Seek on a gz-file pointer . int gzseek ( int zp, int offset) . Sets the file position indicator for the file referenced by zp to offset bytes into the file stream. ... If the file is opened for reading, this function is emulated but can be extremely slow. If the file is opened for writing, only forward seeks are supported; gzseek then compresses a sequence of zeroes up to the new starting position. ... See also gztell() and gzrewind() . ...

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• dio_seek
• substr
• mb_strpos

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred
• SDPsite

... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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Multichannel Flare Spectrograph . ... phi - the angle between the green vertical line passing through the solar disk image and the violet radius vector "r" of the object located at the center of the spectrograph slit- red cross. positive - clockwise, negative - counterclockwise . ... mx = x coordinate of the coelostat main mirror . ... x : carthesian solar coordinate alog axis parallel to solar equator (in arcsec) . y : carthesian solar coordinate alog axis parallel to solar axis (in arcsec) ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• A Description of NNTP

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER
• SAL- Other Scientific Fields - Chemistry, Biology Related - SC_rate
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW

... Postdoctoral research position in heterogeneous catalysis is available in the International Joint Research Lab for Ecoefficient Products and Processes (E2P2L) which is joint research center between Solvay and French National Center for Scientific Research in Shanghai (http://www.e2p2l.com). ... International Joint Research Lab for Ecoefficient Products and Processes (E2P2L) is joint research center between Solvay and French National Center for Scientific Research in Shanghai (http://www.e2p2l.com). ...

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... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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• GluePlugin - TWiki - TWiki - (printable)

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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• Nonparametric approaches to the description of EEG piecewise stationary

. аљб?аКаОаВаОаДб?б?аВаО аПаОаЛб?аЗаОаВаАб?аЕаЛб? Gnumeric . Prev . Next . MID -- . MID(string, position, length) . т?Еб?аВб?а?аПа?аПб?а? б?б?б?а?а?а?б?аЗа? б?аВ а?а?а?б?аЗб? @string б?аПа?б?б?аПа?а?а?а?а?а? а? @position б?б?б?б?б?б? @lenght а?б?б?б?б?б?б?б?. аМа?аП а?а?б?аЗа?б?а? а?б?б?б?б?а?а?б?б?аП а? Excel. MID("аЗб?аПа?а?аПб?",4,3) а?аПб?б?а?б?а?а?а? "а?а?аП". LEFT , RIGHT . Prev . Home . Next . MEDIAN . Up . MIN

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• Long Description

Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=6 PYTHON_COMPAT=( python2_7 python3_{3,4,5} pypy pypy3 ) inherit distutils-r1 DESCRIPTION= ANSI escape character sequences for colored terminal text cursor positioning HOMEPAGE= https :// pypi .python.org/ pypi / colorama https ://github.com/tartley/ colorama SRC_URI= mirror:// ...

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• http://mirror.msu.net/pub/gentoo-portage/dev-python/colorama/colorama-0.3.6-r1.ebuild
• http://mirror.msu.net/pub/gentoo-portage/dev-python/colorama/colorama-0.3.3.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild

Mustela . On a taxonomic position of the weasel (Carnivora, Mustela ) from the Cheju Island (South Korea) . ... The weasel from Cheju Island (formerly в?' Quelpart Island), which is situated in Korean Strait south of the coast of South Korea, was described as a separate species Lutreola quelpartis Thomas, 1908. ... Abramov A.V. 2000b. The taxonomic status of the Japanese weasel, Mustela itatsi (Carnivora, Mustelidae) // Zoologicheskii Zhurnal. ... A Pictorial Guide to the Mammals of Japan. ...

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• Taxonomic position of Eptesicus bobrinskoi - abstract