... dummy_pytale.py: file added Can do: display an alignment, colour by identity. Features: Both sequence names and sequences are TextCtrl. ... 12 import allpy_data . ... 14 class Project ( object ): . ... 31 Project(sequences, alignment) -> new Project with sequences and . ... 33 Project(fasta_file) -> new Project, read alignment and sequences . ... 38 self . ... 92 >>> sequences,alignment=project.Project.get_from_fasta(open("test.fasta")) . ... 128 alignment [ sequences [ - 1 ]] = alignment_list . ...

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• allpy: 0905a39738f2 lib/project.py
• allpy: lib/block.py annotate
• allpy: 679665ecae37 allpy/block.py

... annotate . ... 6 def __init__ ( self , position , velocity , lifetime , mutated ): . ... 23 def check_collision ( self , bacteria , delta , bact_r , delta_t ): . ... 34 def move ( self , bacteria , delta_t , radius , delta , bact_r ): . ... 40 def collision ( self , other , bacteria , delta_t , radius , delta , bact_r ): . ... 52 def asexual ( self , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 67 def sexual ( self , other , bacteria , delta_t , radius , delta , bact_r , . ...

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• petri_dish: Bacteria.py annotate

SVETKA, a program for analysis of different alignments . Back to the help page . ... Such a feature can look like " Leucine in the position 362 of the alignment of the entire family " and can, in many cases, be a "decision rule" to distinguish sequences from two sides of a tree branch. ... Comparing the alignment with an input tree (the tree may be entered by the user or reconstructed with the WPGMA algorithm), the program detects supporting positions of the alignment for every branch the tree. ...

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• SDP home page
• About authors ot this complex
• Inquiry information || Parsimony algorithm

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• S : rm_systems

A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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• Genebee Predicted Annotation
• AliComp - GeneBee Alignment Comparison Help

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Orthology relat ions were taken from OrthoDB 6 database [1]. ... The ancestral protein reconstruction in each internal tree node of COPG was made using RAXML 7.4.2 on the basis of best COPG protein alignment (selected by AQU A 1.1) containing only co lumns with limited variation (selected using NOISY 1.5.12), the COPG tree (FASTTREE 2.1) corrected by species tree (using TREEFIX [2]) and calculated amino acid replacement matrices (via MODELESTIMATOR 1.1). ... Acids Res., ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/179.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf

Sequin . Sequin is a program designed to aid in the submission of sequences to the GenBank, EMBL, and DDBJ sequence databases. ... http://www.ncbi.nlm.nih.gov/Sequin/ . ... Other Packages: Yes, ftp://ncbi.nlm.nih.gov/sequin/ . ... None . ... ftp://ncbi.nlm.nih.gov/sequin/ . ... User Comments: . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . Comments? SAL@KachinaTech.COM . Copyright 1995-2001 by Herng-Jeng Jou . ...

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• Sternberg Astronomical Institute
• Ltree module for PostgreSQL

... SDPfox - the software package for the prediction of functional specificity groups and amino acid residues that determine the specificity using MPA. ... Amino acid residues that determine differences in protein functional specificity and account for correct recognition of interaction partners, are usually thought to correspond to those positions of a protein multiple alignment, where the distribution of amino acids is closely associated with grouping of proteins by specificity. ...

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• SDPsite - Algorithm Format requirements
• SDPpred
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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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• ConClus

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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... Программа повышения квалификации ?Исследование природы вместе с детьми? ... День леса - 2013 . ... Содержание сборника, 2004 . ... из сборника Вместе со всей планетой , Пущино 1995 . ... Загадки и тайны мира природы очень интересны детям, даже самым маленьким. ... В 1995 г. мы вместе с учеными подмосковного города Пущино помогали школьникам выступить в роли экологических наставников для малышей . Заметка об этой работе была опубликована в журнале ЮНЕСКО Connect . ...

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PHP Manual . ... PHP 4 >= 4.0.0) domxml_children -- Returns children of a node or document . array domxml_children ( object doc|node) . ... This function is EXPERIMENTAL . ... In the following example the variable children will contain an array with one node of type XML_ELEMENT. ... php $doc = new_xmldoc("1.0"); $root = $doc->add_root("HTML"); $head = $root->new_child("HEAD", ""); $head->new_child("TITLE", "Hier der Titel"); $head->set_attribute("Language", "ge"); $children = $head->children(); ?> ...

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• hw_Children
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... The study is focused on forest ecosystems exposed to extreme air pollution from the nickel-processing industry in Northern Fennoscandia. Long-term deposition of heavy metals and sulphur has caused strong soil contamination and severe damage to trees and ground vegetation, their structure, composition and chemistry. ... Multivariate analyses show that changes in the element composition of plants depend both on air pollution and on natural factors. ...

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... About lab . ... The LidarK library provides an open-source framework for processing multidimensional point data such as 3D LIDAR scans. ... Download LidarK 2.0 , or browse for the previous versions and data samples . ... We called the data structure we designed Seg-Tree . ... GML LidarK Library v. 2.0 September 10, 2010 Download . GML LidarK Library v. 1.2 December 5, 2008 Download . GML LidarK Library v. 1.1 September 9,2008 Download . GML LidarK Library v. 1.0 July 1, 2008 Download . ...

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• Removing of blocking effect from video | Graphics and Media Lab
• GML LidarK Library | Лаборатория компьютерной графики и мультимедиа

... Each web can optionally contain a topic called WebNotify. ... Changed: . ... A * will match zero or more other characters - so, for example, Fred* will match all topic names starting with Fred , *Fred will match all topic names ending with Fred , and * will match all topic names. ... Unsubscribing to specific topics - Each topic may optionally be preceded by a '+' or '-' sign. ... Subscribing to entire topic ("news mode") - Each topic may optionally be immediately followed by an exclamation mark ! ...

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• TWikiStoreRcsLiteDotPm - TWiki - TWiki
• TWikiStoreRcsLiteDotPm - TWiki - TWiki - (printable)
• %TOPICTITLE% ( vs. 1) - TWiki

The Isaac Newton Institute (Instituto Isaac Newton) for astronomical research (INI) was founded in 1978 by Gonzalo Alcaino. The main office is located in the eastern outskirts of Santiago (Chile). ... The Moscow branch was the first one established outside Chile. ... Besides the above named branches, the Chilean staff of the Isaac Newton Institute is involved in collaboration with astronomers of the Observatory of Rome in several research projects using data secured from telescopes in Chile. ...

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• Number of accreting X-ray binaries of selected types
• Be/X-ray binaries and candidates

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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IEN-74 Sequence Number Arithmetic William W. Plummer Bolt Beranek and Newman, Inc. ... A basic concept is that of a "window", a range of sequence numbers which begins at a "left" pointer and ends at a "right" pointer. ... Numbers | ... Left Right Note that Left is the the first number within the segment. ... The CheckWindow Function Because the sequence number space is actually a ring and arithmetic is done modulo 2**32, there is no concept of one sequence number being greater (or less) than another. ...

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• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/bcp/bcp139.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc5249.txt.pdf
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc1426.txt.pdf

The QChildEvent class contains event parameters for child widget events. ... QChildEvent  ( int type, QWidget * child )  . QWidget*  child  () const . bool  inserted  () const . ... Child events are sent to widgets when children are inserted or removed. In this release of Qt, no event handlers are defined to receive child events. ... Constructs a child event object. ... Returns the child widget inserted or removed. ... Returns TRUE if the widget lost a child. ... qevent.h: 1998/07/03 . ...

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• Qt Toolkit - QGManager Class
• Qt Toolkit - QKeyEvent Class
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