... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_ line -- for determine length of fasta sequence string in user input everywhere: standart long_ line =60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from ... 6 def __init__ ( self , * args , ** kw ): . ... init__ ( self , * args , ** kw ) . ... 17 def _command ( self , * args , ** kw ): . ...

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• allpy: 4a2341bc90b1 sandbox/common.py
• allpy: 675b402094be sandbox/wx-dc.py
• allpy: 675b402094be sandbox/gl.py

... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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. Color Explanation . Red absolutely conservative a.a residues (i.e. 100% identity) . 80% identity . 60% identity . No color . Percentage of Conservative Residues within the Ligand Contact Area . 25/34 = 0.735 . Santesson Elly, 2004

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• Secondary structure
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• Blast Result

Enclosure structures of equal level line fields in the gradient filling problem" . Ivanov B.N. In this paper, the method of gradient filling of equal level line fields by color scale is considered. ... The root tree structure of equal level line enclosure is applied to the context analysis of all equal level line values in order to correctly specify the color values of their filling. A working algorithm of gradient filling of equal level lines is given. PostScript (in Russian) (2.67MB) . ...

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DCSE . DCSE (Dedicated Comparative Sequence Editor) is a multiple alignment editor. ... It offers lots of features such as color display of characters and structure, automatic alignment relative to sequences already aligned with others, sequence grouping, sequence or pattern searching, marker system and checking of incorporated RNA structure. tkDCSE is a version of DCSE for X-Windows. ... Home Site: . ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL -- Scientific Applications on Linux -- New Items Added in 1997/12
• APOD: 2001 February 23 - M55 Color Magnitude Diagram
• APOD: 2002 May 23 - N132D and the Color of X-Rays

... The CompHEP Lagrangian tables do not describe explicitly the color structure of a vertex. ... for three color octets. ... Each vertex containing 4 color particles is split to 2 vertices which are joined by an automatically generated auxiliary field. ... Instead of evaluating this expression and that splitting all vertices independently, one can introduce one color octet auxiliary field and write this Lagrangian term as . ... enable vertex level splitting (only for vertices with 4 color particles). ...

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• Structure of LanHEP input file
• Getting started with LanHEP
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... Asteroid Gaspra's Best Face . ... 20.10.1995 . ... Credit: NASA , The Galileo Project , USGS , Cornell U. , JPL Explanation: Above is the best yet color image of the asteroid Gaspra based on data returned by NASA's Galileo spacecraft. ... Galileo encountered Gaspra on October 29, 1991 during the cruise phase of its mission to study the Jovian system. ... Updates on Galileo's progress can be found at "Online from Jupiter" . ... October 1995 . ... Publications with keywords: Gaspra - asteroid . ...

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• Астронет > Asteroid Gaspra's Best Face
• Journal "Peremennye Zvezdy"
• M55 Color Magnitude Diagram

... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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• wLake program homepage
• S : rm_systems

Электронная библиотека Попечительского совета . ... Heggins D., Taylor W. - Bioinformatics: Sequence, Structure and Databanks . ... Название: Bioinformatics: Sequence, Structure and Databanks . Авторы: Heggins D., Taylor W. Аннотация: . Bioinformatics covers practical important topics in the analysis of protein sequences and structures. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Peters C.A., Steenbrink J.H. - Mixed Hodge Structures :: Электронная библиотека
• Kechris A.S., Louveau A. - Descriptive Set Theory and the Structure of Sets of

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

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• ConClus
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TWiki . ... If yes, set SITEMAPLIST to on , do not set NOSEARCHALL, and add the "what" and "use to..." description for the site map. Make sure to list only links that include the name of the web, e.g. Services.Topic links. ... The following settings are web preferences of the TWiki.Services web. These preferences overwrite the site-level preferences in TWikiPreferences , and can be overwritten by user preferences (your personal topic, i.e. TWikiGuest in the TWiki.Main web) . Preferences: . ...

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• PatternSkinCssCookbook - TWiki - TWiki - (printable)
• PatternSkinCssCookbook - TWiki - TWiki
• %TOPICTITLE% (3 vs. 4) - TWiki

You are here: Foswiki > System Web > Skins > PatternSkin > PatternSkinCssCookbook (18 Apr 2011, ProjectContributor ) E dit A ttach . ... Point the CSS preference settings in System.DefaultPreferences or Main.SitePreferences to your new files: * Set FOSWIKI_LAYOUT_URL = %PUBURLPATH%/%SYSTEMWEB%/YourNewTopic/layout.css * Set FOSWIKI_STYLE_URL = %PUBURLPATH%/%SYSTEMWEB%/YourNewTopic/style.css * Set FOSWIKI_COLORS_URL = %PUBURLPATH%/%SYSTEMWEB%/YourNewTopic/colors.css . ... See example . ... System . ...

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• MainFeatures < System < Foswiki
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You are here: Foswiki > System Web > Skins > PatternSkin > PatternSkinCssCookbook (18 Apr 2011, ProjectContributor ) E dit A ttach . ... Point the CSS preference settings in System.DefaultPreferences or Main.SitePreferences to your new files: * Set FOSWIKI_LAYOUT_URL = %PUBURLPATH%/%SYSTEMWEB%/YourNewTopic/layout.css * Set FOSWIKI_STYLE_URL = %PUBURLPATH%/%SYSTEMWEB%/YourNewTopic/style.css * Set FOSWIKI_COLORS_URL = %PUBURLPATH%/%SYSTEMWEB%/YourNewTopic/colors.css . ... See example . ... System . ...

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• (backlinks in all Webs) ProjectContributor < Main < Foswiki

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• Site Cluster
• SDPsite
• SDPsite - PF01205

grdimage - Create grayshaded or colored image from a 2-D netCDF grd file grdimage grdfile -C cptfile -J parameters [ -B tickinfo ] [ -E dpi ] [ -I intensfile ] [ -K ] [ -M ] [ -O ] [ -P ] [ -R west / east / south / north [ r ] ] [ -U [/ dx / dy /][ label ] ] [ -V ] [ -X x - shift ] [ -Y y - shift ] [ -c copies ] grdimage reads a 2-D gridded file and produces a gray-shaded (or colored) map by assigning each contour interval a gray-shade (or color). ... Je lon0 / lat0 / scale (Equidistant). ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/grdtrack.html
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... История кафедры . ... младших курсов . ... Уважаемые студенты 1-го, 2-го и 3-го курсов! ... Семинар кафедры проходит по пятницам в 15.20 в комн. ... а также на стендах кафедры на 2-м и 4-м этажах. Информацию о более ранних событиях см. в разделе "Жизнь кафедры" . ... 119991, Москва, Ленинские горы, д.1, стр.2, МГУ имени М.В.Ломоносова, физический факультет, кафедра фотоники и физики микроволн . ...

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Chapter?а5.?а Getting images into GIMP . ... Image types . ... Working with Images . ... There are three possible modes: RGB, grayscale, and indexed. ... Because every humanly distinguishable color can be represented as a combination of red, green, and blue, RGB images are full-color. ... Essentially the difference between a grayscale image and an RGB image is the number of тАЬ color channels тАЭ: a grayscale image has one; an RGB image has three. ... A color image in RGB mode with an Alpha channel. ...

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• HelpOnTables - UNИX
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... Courses . ... Colorization is a computer-assisted process of adding color to a monochrome image or a movie: . ... colorized image . The aim of this project was to create a fully interactive colorization algorithm, capable of real-time working with several megapixel images - a property, most currect algorithm do not possess. ... A user just marks some pixels with desired colors and the algorithm automatically propagates indicated colors to the remainder of the image. ... resulting color image . ...

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