... file . ... diff . ... file log . ... line diff . ... 1.52 + Sequence = cls. sequence _type 1.53 + not_gap = lambda (i, char): char != - 1.54 + no_gaps = line.replace( - , ) 1.55 + sequence = Sequence (no_gaps, name , description , source) 1.56 + for i, (j, char) in enumerate(filter(not_gap, enumerate(line))): 1.57 + self[j][seq] = sequence [i] 1.58 + self. sequences .append( sequence ) 1.59 + 1.60 + @classmethod 1.61 + def from_fasta(cls, ...

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• allpy: allpy/dna.py annotate
• allpy: allpy/fileio.py diff
• allpy: 50633fcbbdc4 allpy/sequence.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... Wed, 15 Dec 2010 16:21:26 +0300 . ... Added reasonable binding for mousewheel to Scroll widget . Tue, 14 Dec 2010 17:11:15 +0300 . Yashina Ksenia . Automated merge with ssh://kodomo.fbb.msu.ru/petri_dish . ... added menu bar . ... Mon, 13 Dec 2010 21:26:28 +0300 . ...

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... Parsimony method . ... It is based on the following principle: the ancestral sequences (posed in nodes of a phylogenetic tree) should be such that the minimal required number of character replacements on the branches of the tree is less than for any other choice of sequences. ... If the preliminary character of the node is * , but the output character of its immediate ancestor is some letter (say, X ), and its set of possible characters contains X , then the output character of the node is also X . ...

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• About authors ot this complex
• About this project
• Inquiry information || Distances

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• A Description of NNTP

... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

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