... annotate . ... 1 import sys . bnagaev@83 . ... 3 from allpy.alignment import Alignment . ... 4 from allpy.block import Block . ... 6 p = Alignment ( open ( 'test.fasta' )) . ... 7 print "alignment length: %i " % len ( p ) . bnagaev@110 . ... bnagaev@120 . ... pdb_chain_add ( open ( '1jcc.pdb' ), '1jcc' , 'B' ) . ... pdb_chain_add ( open ( '1kfm.pdb' ), '1kfm' , 'A' ) . ...

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• allpy: setup.py annotate
• allpy: docs/Makefile annotate
• allpy: allpy/rna.py annotate

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• ApSA courses

... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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• Geometrical core

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• ETS_all_contacts alignment

Annotation of the graduate work of 6th-year student A.S. Voronov X-ray investigation of periodical and nonperiodical systems with small layer thickness. ... X-ray optical elements are widely used for guiding and forming synchrotron beams and metrological methods of production and postproduction X-ray optical elements control are getting more and more important. ... In this work X-ray optical elements control method was performed. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2013/Safronov_Fedotov_en.pdf
• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2011/Smetanina_Kandidov_en.pdf

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Notes on searching by similarity

... Trac has a built-in functionality for visualizing тАЬdiffsтАЭ - changes to files. ... Line numbers on the left side indicate the exact position of the change in both the old and the new version of the file. ... When viewing a repository check-in, such as when following a changeset link or a changeset event in the timeline , Trac will display the exact changes made by the check-in. ... The last possibility for examining changes is to use the Last Change link provided by the TracBrowser . ...

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• petri_dish: Bacteria.py annotate
• petri_dish: scale.py annotate
• petri_dish: Petri.py annotate

... Effect of mutations in the beta5-beta7 loop on the structure and properties of human small heat shock protein HSP22 (HspB8, H11). ... Because conservative Lys residues located in the beta5-beta7 loop and in the beta7 strand appear to play an important role in the structure and properties of HSP22, mutations in this part of the small heat shock protein molecule might have a deleterious effect and often correlate with the development of different congenital diseases. ...

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• The pivotal role of the beta 7 strand in the intersubunit contacts of different
• Structure, properties, and probable physiological role of small heat shock
• Effect of mutations mimicking phosphorylation on the structure and properties

The CompHEP symbolic output can be used for further manipulation with an answer which has been obtained by means of the built-in symbolic calculator. It might be a summation of all diagrams to a common denominator expression, a symbolic integration of answer, a representation of answer as a function of special set of variables and so on. ... As it was mentioned above (Section ) the result obtained by summation of all diagrams must be symmetrized in the case of identical outgoing particles. ...

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• MRS structure functions
• Menu 8.

... PbTe, SnTe, GeTe and their solid solutions are narrow-gap semiconductors widely used in infrared optoelectronics and for thermoelectric energy conversion. ... The present work is a continuation of recent EXAFS studies performed at the NSLS on GeTe, SnTe and PbTe crystals doped with high concentration of indium (10-35 at.% ... The studied samples were PbTe, SnTe and GeTe doped with 1.5-2% of indium along two sections (InTe and In 2 Te 3 ) of the phase diagrams. ... Results of data analysis. ...

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• Time evolution of an incommensurate structure of Rb2ZnCl4 in uniaxial
• Kinetics of domain structure in ferroelectric thin films

... We applied this approach to investigate mRNA secondary structures of the influenza virus. In a recent study, we investigated if mRNA structures can be associated with the coldadapted, temperature-sensitive (ca/ts) phenotype of the influenza A virus which has been used as live attenuated vaccines for decades (2). ... We identified those areas within an RNA chain where dissimilarities of RNA secondary structures at two different temperatures are particularly pronounced. ... RNA biology, 9:1266­1274. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/4.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/134.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/66.pdf

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Each day a different image or photograph of our fascinating universe is featured, along with a brief explanation written by a professional astronomer. 2013 May 19 . Earth's Richat Structure . Image Credit: NASA / GSFC / METI / Japan Space Systems , and U.S./Japan ASTER Science Team . Explanation: What on Earth is that? ... Once thought to be an impact crater , the Richat Structure 's flat middle and lack of shock-altered rock indicates otherwise. ... About APOD | ...

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• APOD: 2002 October 28 - Earth's Richat Structure
• APOD: 2000 October 8 - Earth's Richat Structure
• APOD: January 5, 1998 - Earth's Richat Structure

Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

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Электронная библиотека Попечительского совета . ... Peters C.A., Steenbrink J.H. - Mixed Hodge Structures . ... Название: Mixed Hodge Structures . Авторы: Peters C.A., Steenbrink J.H. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Cain T. - Hardening, Tempering and Heat Treatment: The Structure of Steel and
• Lipowsky R., Sackmann E. - Structure and Dynamics of Membranes: Generic and
• de Floriani L. - Shape Analysis and Structuring :: Электронная библиотека

Study of jet transverse structure with CMS experiment at 10 TeV Natalia Ilina (ITEP, Moscow) for the CMS collaboration CMS PAS QCD-08-002 (2009) 1 LOMONOSOV09, MSU, Moscow 24/08/2009 Outline 1. ... 7 LOMONOSOV09, MSU, Moscow 24/08/2009 Monte Carlo predictions HERWIG++ Particle level Jet transverse structure for all jets (black lines) depends on while it does not depend on for gluon and quark jets. ...

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• http://nuclphys.sinp.msu.ru/mirrors/1996_10.pdf
• http://nuclphys.sinp.msu.ru/conf/lpp14/210809/Panov.pdf

... We consider now change-points in different components of the frequency spectrum of typical EEG signal. ... Only few change-points in power are found in the initial EEG (unless a prominent alpha rhythm is present). ... Change-points in different frequency components of the EEG . ... Change-points in different types of the EEG alpha activity without substantial gradual changes . ... As can be seen from Fig. 7.3, the program reliably detected the change-points despite of such variety of signal patterns...

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• Change-points at different levels of the hierarchy of EEG segmental...
• Other prospects of the change-point based analysis
• Change-points in multi-channel EEG

The first major global tomographic study was made by Professor Dziewonski in early 70's. The idea of this study was that the travel time anomalies observed for many ray paths, criss-crossing the Earth between various points near the Earth's surface and reaching different depths in its interior, could be resolved formally into a three-dimensional (3-D) model. ... How to use Harvard's 3-D Earth models? Now, you can download source codes in order to use Harvard's recent Earth models. ...

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... Variation of he baculum structure of the Palaearctic badger (Carnivora, Mustelidae, Meles ) . ... The morphology of baculum (os penis) of the badger Meles meles from different parts of its Palaearctic range is examined. ... A taxonomic review of the genus Mustela (Mammalia, Carnivora) // Zoosystematica Rossica. ... Structure of baculum (os penis) in Mustelidae (Mammalia, Carnivora), Communication 1] // Zoologicheskii Zhurnal. ... Baculum use in age determination in Eurasian badger // Mammalia. ...

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• The structure of voice signals of Siberian chipmunk (Tamias sibiricus Laxmann
• The spermatozoa structure peculiarities of the subgenus Sumeriomys (Rodentia,
• Reevaluation of taxonomic structure of the root vole (Microtus oeconomus