... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 25 Don't change self.sequences -- it may be a link to other block.sequences . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 136 def sequences_chains ( self ): . ...

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• allpy: allpy/base.py diff
• allpy: allpy/dna.py annotate
• allpy: allpy/rna.py annotate

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• Example of supporting positions
• About this project
• Inquiry information || Parsimony algorithm

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• SVETKA, a program for multiple sequence alignments analysis
• Geometrical core

NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/27.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf

Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• OUTPUT
• GeneBee

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus
• Nhunt

... 5 def __init__ ( self , position , velocity , lifetime , mutated ): . ... 11 def check_collision ( self , bacteria , delta , bact_r ): . ... 33 def asexual ( self , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 38 def sexual ( self , other , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 41 def find_place_a ( self , bacteria , delta , bact_r ): #searches for place for children . ... 48 def find_place_s ( self , other , bacteria , delta , bact_r ): . ...

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• petri_dish: scale.py annotate
• petri_dish: Petri.py annotate

The Isaac Newton Institute (Instituto Isaac Newton) for astronomical research (INI) was founded in 1978 by Gonzalo Alcaino. The main office is located in the eastern outskirts of Santiago (Chile). ... The Moscow branch was the first one established outside Chile. ... Besides the above named branches, the Chilean staff of the Isaac Newton Institute is involved in collaboration with astronomers of the Observatory of Rome in several research projects using data secured from telescopes in Chile. ...

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• Seminars

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• Input Formats
• SDPpred
• SDPsite - Algorithm Format requirements

RnaViz . RnaViz is a user-friendly, portable, windows-type program for producing publication-quality secondary structure drawings of RNA molecules. Drawings can be created starting from DCSE alignment files if they incorporate structure information or from mfold ct files. The layout of a structure can be changed easily. ... Home Site: . http://rrna.uia.ac.be/rnaviz/ . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - Evalign
• SAL- Other Scientific Fields - Chemistry, Biology Related - PomBase
• SAL- Other Scientific Fields - Chemistry, Biology Related - PUZZLE

... News . ... 32-bit Microcontroller Programming . Microcontroller Control of Motors . Second-year students classes . ... Parallel Programming . ... Microcontroller Programming . ... Microcontroller-related . ... Serguey Elizarov . Serguey Zapunidi . ... Alexander Karabutov . ... Serguey Yakovlev . ... We sincerely wish you a Happy New Year and Merry Christmas! We hope that this year has been for you a year of new achievements. ... Happy New Year 2016! ... Hits . ... Written by Pavel . ...

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... Previous message: [Comphep-common] Re: $COMPHEP/genEvents . Next message: [Comphep-common] Re: a bug in comphep b76i (windows version) . Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] . Dear COMPHEP experts, Is it possible to evaluate width and branching ratios for a 1->2 process (for example ~1+ -> 2*x) in batch mode? I need these values as inputs to perform further batch calculations, Thanks a lot for your help. ...

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... Geography of World Economy . ... Recreational Geography and International Tourism . ... Physical Geography and Landscape Science . ... About Faculty . ... Research laboratories . ... Type of field courses . ... Specialists of the same profile graduate from the branches of the Faculty, located in Sevastopol (Ukraine) and Astana (Kazakhstan). ... International programme in Natural Resource Management and Law offers a unique combination of Natural and Environmental Sciences and Science of Law. ...

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List of Publications . ... Palyulin V.V., Potemkin I.I. Article " Microphase Separation in Melts of Double Comb Copolymers ", Polymer Science, Ser. ... Palyulin V.V., Potemkin I.I., Microphase separation of double-grafted copolymers (centipedes) with gradient, random and regular sequence of the branch points , Journal of Chemical Physics, 2007 , 127, 124903. ( download ) . ... Palyulin V.V., Potemkin I.I., "Microphase separation in double comb copolymer melts , . ... Palyulin V.V., Potemkin I.I., " . ...

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• SHORT ANNOTATION AND MAIN RESULT
• Seminar in Polymer Physics

... 1 Концепция политики разработки дистрибутивов ALT Linux . ... Бранч ? ... Предлагается осуществлять следующую политику сопровождения бранча и создания дистрибутивов в ALT Linux: . Бранч для разработки "development branch" создается путем копирования Sisyphus в определенное время (в сентябре и марте), полгода идет к стабилизации. ... В это самое время мейнтернеры могут самостоятельно размещать в бранч для разработки свои новые и исправленные пакеты, также не забывая размещать их и в Sisyphus. ...

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• Index of /static/AltlinuxOrg_Branches_ReleasePolicy
• PspoMaterials/AltlinuxOrg_Branches_ReleasePolicy - UNИX
• Index of

Pod-Moscowny . Moscow-Regional) . Branch . ... Moscow State University . Page in Russian . Moscow-Regional Branch of M.V.Lomonosov Moscow State University was founded in 1996 in Chernogolovka , town for science and education, placed in 40 km to the North-East from Moscow-city border. Chernogolovka today is considered to be one of the most important Russian scientific and educational centers in physics and chemistry . ... Branch of Moscow State University, . ... Russian Federation . ...

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D.D.Sokoloff, A.F.Lanza, D.L. Moss, S.M.Tarbeeva. Polar branches of stellar activity waves: Dynamo models, Astronomi\-sche Nachrichten, {\bf 332}, N 9/10, 872-875, 2011. Stellar activity data provide evidence that some activity wave branches propagate polewards rather than equatorwards (the latter being the solar case). ... For this star, the polar branch seems to coexist with an equatorward branch which propagates through more or less the same latitudinal domain. ...

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• Moss, D., Sokoloff, D., Lanza, A. F..Polar branches of stellar activity waves:

. [ Войти ] . Главная -> Фильмы -> Love on a Branch Line . Пользователи . Демо . Деньги . Фильмы . Форум . Love on a Branch Line . Великобритания 1994 . отметить . Сериал . Комедия .

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• The Lost Spider Pit Sequence - Фильмы - Kinfo.ru

. Name . Last modified . Size . Description . Parent Directory . - . branches_release_policy.html . 26-Sep-2011 12:35 . 30K . branches_release_policy_files/ . 26-Sep-2011 12:35 . - . Apache/2.2.16 (Debian) Server at uneex.mithril.cs.msu.su Port 80

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