... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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+++ b/allpy/base.py Thu Mar 24 20:46:06 2011 +0300 @@ -201,13 +201,8 @@ `gaps` set), treat them accordingly. sequences = [] - if format == ' fasta ': - sequences = fileio.FastaIo( file ).get_all_strings() - elif format == ' msf ': - sequences = fileio.MsfIo( file ).get_all_strings() - else: - raise Exception( We don't support other formats yet ) - for ( name , description , body) in ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• Input Formats
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Some additional inquiry information . ... Formats of alignments analysed . This program can analyse alignments of two formats - .fasta and .aln . ... But every analysed alignment should have either .fasta or .aln format! ... NMA0622 ---------------------MTDYSKTVNLLESPFPMRGNLA----KREPAWLKSWYEQ K---RYQKLREI---AKG-----RPKFILHDGPPYANG-DIHIGHAVNKILKDIIIRSKT QAGFDAPYVPG-WDCHGLPIEVMVEKLHGK------DMPK----ARFRELCREYAAEQIA . ... Aln format . ... After this blocks of the alignment are present. ...

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... Next: COM-port initialization file format Up: Scanning Probe Microscopy Image Previous: Software Installation Contents Index . File is written in text format and consists from one section. ... A record has following format: <voltage>=<temperature>; . ... Example of temperature initialization file listed below. [temperature] -3.00=27.5; -2.67=28.0; -2.33=29.0; -2.00=31.5; -1.67=33.5; -1.33=36.0; -1.00=37.0; -0.67=39.0; -0.33=42.0; 0.00=42.5; 0.33=45.0; 0.67=47.5; 1.00=49.0; 1.33=50.0; 3.00=60.0; . ...

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The QImageIO class contains parameters for loading and saving images. ... QImageIO  ( QIODevice * ioDevice, const char * format )  . ... const char*  format  () const . ... void  defineIOHandler  ( const char * format, const char * header, const char * flags, image_io_handler read_image, image_io_handler write_image )  . ... QImageIO contains a QIODevice object that is used for image data I/O. The programmer can install new image file formats in addition to those that Qt implements. ...

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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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... PHP 3 <= 3.0.18, PHP 4 >= 4.0.0) number_format -- Format a number with grouped thousands . string number_format ( float number [, int decimals [, string dec_point [, string thousands_sep]]]) . number_format() returns a formatted version of number . ... If only one parameter is given, Number will be formatted without decimals, but with a comma (",") between every group of thousands. ... For example, if you use foo as thousands_sep on the number 1000 , number_format() will return 1f000 . ...

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SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

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• PLANdbAffy: probe-level annotation database for Affymetrix expression
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... It is extended to improve the display of hierarchical web structures, a feature added to TWiki4 and adds more flexibility when used in TWikiApplications. ... This tag iterates over all specified webs and all of their subwebs recursively while using the specified format strings to produce the output. ... subfooter : format string following the output of any subweb; subheader and subfooter are only added if the list of subwebs of the current web is not empty (defaults to footer ) . ... format . ...

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You are here: Foswiki > System Web > Macros > VarFORMAT (12 Feb 2011, ProjectContributor ) E dit A ttach . Syntax: %FORMAT{"list"}% . ... Treat input list as either topic or string . ... Currently only two types of list data are supported; topic names ( type="topic" ) and plain strings ( type="string" ). "" . ... Examples: %FORMAT{"one,two,three" type="string" format=" * $item"}% %FORMAT{"%SKIN%" header="the Skin setting is evaluated in this order:" format=" 1 =$topic=" footer=" 1 =default=" }% . ...

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C-DVM . ... Language description . ... 6 Remote data specification . ... 6.2 Remote references of SHADOW type . ... 6.2.2 Specification of independent references of SHADOW type for one loop . 6.2.3 ACROSS specification of dependent references of SHADOW type for single loop . ... 6.3.2 Synchronous specification of remote references of REMOTE type . 6.3.3 Asynchronous specification of remote references of REMOTE type . ... 6.4.1 Synchronous specification of remote references of REDUCTION type . ...

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... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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... О UNИX . ... Неизменяемая страница . ... Processing Instructions . ... redirect . ... pragma . ... deprecated . ... MoinMoin processing instructions have the same semantics as in XML: they control the paths taken when processing a page. ... For more information on the possible markup, see HelpOnEditing . Processing instructions MoinMoin knows of: . ... Redirect to a different page (see PageRedirect ) #REDIRECT pagename . ... Sets processing modes for this page: #PRAGMA mode arguments . ...

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You are here: Foswiki > System Web > Macros > VarFORMAT (12 Feb 2011, ProjectContributor ) E dit A ttach . Syntax: %FORMAT{"list"}% . ... Treat input list as either topic or string . ... Currently only two types of list data are supported; topic names ( type="topic" ) and plain strings ( type="string" ). Examples: %FORMAT{"one,two,three" type="string" format=" * $item"}% %FORMAT{"%SKIN%" header="the Skin setting is evaluated in this order:" format=" 1 =$topic=" footer=" 1 =default=" }% . ...

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This example shows a difference between CSS's table model for HTML and for other document formats. The first, HTML, example is defined by HTML to be illegal, as it would lead to overlapping cells if HTML's rules for layout are followed. ... The diagram depicts how the two examples, the HTML one and the almost identical non-HTML one, might be rendered. ... The rendering of the non-HTML example is on the right, it follows the CSS rules and thus has no overlapping cells. ...

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... rfbr:rest:jobschema ]] . ... 08/122010 15:11 demichev [Атрибуты описания заданий] 08/122010 15:10 demichev [JSON Schema для описания заданий] 08/122010 15:09 demichev [JSON Schema для описания заданий] 08/122010 15:06 demichev [JSON Schema для описания заданий] 08/122010 15:06 demichev [Атрибуты описания заданий] 08/122010 15:00 demichev 08/122010 14:50 demichev 07/122010 13:27 demichev created Go Next revision . ... rfbr/rest/jobschema.1291809978.txt.gz ћ Last modified: 08/122010 15:06 by demichev ...

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Lout . ... http://www.ptc.spbu.ru/~uwe/lout/ . ftp://ftp.cs.su.oz.au/jeff/lout . Source Code Availability: Yes . Available Binary Packages: . Debian Package: Yes, http://www.debian.org/distrib/packages . RedHat RPM Package: Yes, ftp://ftp.redhat.com/pub/redhat/current/i386/RedHat/RPMS/ . Other Packages: Yes . ... Software/Hardware Requirements: . ... http://metalab.unc.edu/pub/Linux/apps/wp/lout/ . ... SAL Home | Office Software | Typesetting Formating . ...

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grd2xyz - Converting a grdfile to an ASCII or binary table grd2xyz grdfile [ -H [ nrec ] ] [ -R west / east / south / north [ r ] [ -S ] [ -Z [ flags ] ] [ -bo [ s ] ] grd2xyz reads a binary 2-D grdfile and writes out xyz-triplets in ASCII [or binary] format to standard output. Modify the precision of the ASCII output format by editing the D_FORMAT parameter in your .gmtdefaults file, or choose binary output using single or double precision storage. ... Ignored if binary output is selected. ...

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NAME dbmmanage - Create and update user authentication files in DBM format SYNOPSIS dbmmanage filename [ command ] [ username [ encpasswd ] ] DESCRIPTION dbmmanage is used to create and update the DBM format files used to store usernames and password for basic authentica- tion of HTTP users. Resources available from the httpd Apache web server can be restricted to just the users listed in the files created by dbmmanage. ... This manual page only lists the command line arguments. ...

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• Apache directives
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