The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... file . ... diff . ... file log . ... line diff . ... 1.52 + Sequence = cls. sequence _type 1.53 + not_gap = lambda (i, char): char != - 1.54 + no_gaps = line.replace( - , ) 1.55 + sequence = Sequence (no_gaps, name , description , source) 1.56 + for i, (j, char) in enumerate(filter(not_gap, enumerate(line))): 1.57 + self[j][seq] = sequence [i] 1.58 + self. sequences .append( sequence ) 1.59 + 1.60 + @classmethod 1.61 + def from_fasta(cls, ...

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• allpy: allpy/dna.py annotate
• allpy: ef6692b5ffbc lib/project.py
• allpy: bd3d695f9906 lib/project.py

Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• FASTA format description
• GeneBee BLAST 2.2.22+ Services Help

... High-scoring Sequences . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Sequence Name . ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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• UniProt fields
• SwissProt fields

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Inquiry information || Rule of four sequences
• Inquiry information || Distances
• Inquiry information || Parsimony algorithm

... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• A Description of NNTP

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

8. Change-points at different levels of the hierarchy of EEG segmental...

9. SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER

10. Long description of example illustrating table row height calculations and

11. cpdf_add_annotation

12. http://mirror.msu.net/pub/gentoo-portage/sci-biology/diya/diya-1.0_rc4.ebuild

13. GluePlugin - TWiki - TWiki

14. x264 codec improvement | Graphics and Media Lab

15. Nhunt: program for nucleic acid sequence similarity search

16. CDFE - Centre for Photonuclear Experiments Data - Home page

17. Multiparameter Stability Theory with Mechanical Applications

18. Speech rhythm in diachrony and synchrony

19. http://xray.sai.msu.ru/~ivan/gmt/man/pstext.html

20. http://www.paleopedology.msu.ru/discussions/messages/272.html