Цель данного занятия ознакомится с возможностями гомологичного моделирования комплекса белка с лигандом. ... Программе MODELLER для моделирования структуры белков, в качестве входных данных нужны: управляющий скрипт, файл pdb со структурой-образцом, файл выравнивания с дополнительной информацией. Построим выравнивание последовательности из структуры ID: 1lmp и нашего белка с помощью ClustalW . P1;seq, а после имени последовательности моделируемого белка добавим строчку: . ...

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• model_lig
• Aznauryan's page
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Задание 1: моделирование структуры белка по гомологии. ... Модификация файла со структурой: удалите всю воду из структуры (в текстовом редакторе) всем атомам лиганда присвойте один и тот же номер "остатка" (MODELLER считает, что один лиганд = один остаток) и модифицируйте имена атомов каждого остатка, добавив в конец буквы A, B, C. Смысл операции в том, что атомы остатка 130 имели индекс А, атомы остатка 131 имели индекс В и т.д. Пример: |Было: |Стало | ...

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... Вы будете работать с белком лизоцимом из указанного организма. ... Модификация файла со структурой: удалите всю воду из структуры (в текстовом редакторе) всем атомам лиганда присвойте один и тот же номер "остатка" (MODELLER считает, что один лиганд = один остаток) и модифицируйте имена атомов каждого остатка, добавив в конец буквы A, B, C. Смысл операции в том, что атомы остатка 130 имели индекс А, атомы остатка 131 имели индекс В и т.д. После модификации имен атомов измените номера остатков на 130....

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• Гомологичное моделирование - учебный сайт Смирновой Виктории

The quantitative probabilistic model of the solar energetic particle fluxes description . ... Notice : Undefined index : ion_spectra in / home / swx / public_html / models / database / modules / prog2.php on line 158 Notice : Undefined index : MNX in / home / swx / public_html / models / database / modules / prog2.php on line 159 Notice : Undefined index : NPB in / home / swx / public_html / models / database / modules / prog2.php on ...

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• http://swx.sinp.msu.ru/models/get_charea.php

SAVE_PHOTO_WHEN_TERMINATE=T, CREATE_PRE_MAIN_SEQUENCE_MODEL=T, PRE_MS_RELAX_NUM_STEPS= 200, LOAD_SAVED_MODEL=F, SAVED_MODEL_NAME=' undefined ', CREATE_INITIAL_MODEL=F, INITIAL_MODEL_RELAX_NUM_STEPS= 10, INITIAL_MODEL_EPS= 5.0000000745058060E-002, RADIUS_IN_CM_FOR_CREATE_INITIAL_MODEL= 0.0000000000000000 , MASS_IN_GM_FOR_CREATE_INITIAL_MODEL= 0.0000000000000000 , STEPS_TO_TAKE_BEFORE_TERMINATE= -1, STOP_IF_THIS_FILE_EXISTS=' ', SET_INITIAL_AGE=F, INITIAL_AGE= ...

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• http://crydee.sai.msu.ru/ftproot/pub/MESA-models/M9_Z002/star_job_namelist.out
• Long description for example showing how structurally overlapping cells are

extra:model:main ]] . CompHEP . ... Please address any questions concerning models to their authors. Authors of a model keep all rights. Any CompHEP user may apply a model respecting conditions defined by the authors. ... Model ==== ** Model description ** * Name: modelname * Author: modelauthor * Short description: * Long description: see [[http://www.univ.com/author/auth|modelauthor]] * {{http://comphep.sinp.msu.ru/extra/model/auth.zip|auth.zip}}, 123KB * References: - ref 1 - ref 2 .. ...

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Электронная библиотека Попечительского совета . ... Klas W., Schrefl M. - Metaclasses and Their Application: Data Model Tailoring and Database Integration . ... Название: Metaclasses and Their Application: Data Model Tailoring and Database Integration . ... By introducing the basic concepts of the open object-oriented database management system VODAK, it demonstrates how the extended metaclass concept can be integrated homogeneously into object-oriented data models. ... Class, METACLASS 65-69 . ...

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• Schmidt M. (ed.) - Polyelectrolytes with Defined Molecular Architecture II ::
• Crowell B. - Electricity and Magnetism :: Электронная библиотека
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. "Transaction modeling on architectural level of software design" . K.V. Akhtyrtchenko . Transaction modeling on architectural level of software design is considered. Transaction structure of software is defined. A method for describing the transaction structure with UML is proposed. The relationship between the transaction structure and other structures of architectural level design is specified. PDF (in Russian) (3.77MB) . PostScript. zip (in Russian) (4.71MB) . PDF. zip (in Russian) (2.92MB) .

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• "Optimal Gaussian approximation in the Ising model"
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... 2009 Morphology of Nafion Membranes: Microscopic and Mesoscopic Modeling . Galperin Dmitry , Khalatur Pavel G. , Khokhlov Alexei R. в журнале DEVICE AND MATERIALS MODELING IN PEM FUEL CELLS , том 113, с. 453-482 DOI . ...

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• International Journal of Modelling, Identification and Control - журнал |
• Automatic Control and Computer Sciences - журнал | ИСТИНА - Интеллектуальная
• Mathematical modelling of natural phenomena - журнал | ИСТИНА -

... Phys. A25 (2010) 3933 (arXiv:0908.0457 [hep-ph]) A brief reminder AdS/CFT correspondence ­ the conjectured equivalence between a string theory defined on one space and a CFT without gravity defined on conformal boundary of this space. ... At one imposes certain gauge invariant boundary conditions on the fields. Equation of motion for the scalar field Solution independent of usual 4 space-time coordinates where M is identified with the quark mass matrix and with the condensate. ...

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• http://qfthep.sinp.msu.ru/talks2015/Degt.pdf
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AFML . AFML (The Advanced Feature-based Modeling Language) is a language defined to model the structural and semantic aspects of real world objects such as furnitures and buildings. ... AFML is a rendering independent VR modeling language for which shaders and ray-tracers are available. ... It can be mapped to both the COBRA -based AFML and the C++-based EGR GF -API in a consistent manner. ... Available Binary Packages: . ... SAL Home | Computer Graphics, Images Signals | Misc . ...

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• SAL- Computer Graphics, Images Signals - Modelers - MSDL
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• SAL- Other Scientific Fields - Miscellaneous Software

... The TAB element can be used when you want fine control over the horizontal positioning. The TAB element is used with the <tab id= name > attribute to define named tab stops. ... ALIGN . ... Following text up to next tab or line break is centered on the designated tab stop. ... Following text up to the next tab or line break is rendered flush right to the designated tab stop. ... The text up to the next tab or line break is then aligned such that the decimal point starts at the designated tab stop. ...

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• Paragraphs
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Next: Getting started with LanHEP Up: The LanHEP Handbook Previous: The LanHEP Handbook Contents . ... LanHEP makes possible the generation of Feynman rules for propagators and vertices in momentum representation starting from the Lagrangian defined by a user in some simple format very similar to canonical coordinate representation. The user should prepare a text file with description of all Lagrangian terms in the format close to the form used in standard publications. ...

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grdtrend - Fit and/or remove a polynomial trend in a grd file grdtrend grdfile -N n _ model [ r ] [ -D diff . grd ] [ -T trend . ... grd ] grdtrend reads a 2-D gridded file and fits a low-order polynomial trend to these data by [optionally weighted] least-squares. ... Optionally, append r to the -N option to perform a robust fit. ... N n _ model [ r ] sets the number of model parameters to fit. Append r for robust fit. ... D Write the difference (input data - trend) to the file diff . ...

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... The Millennium that Defined Earth . ... The Earth started as the center of everything , but became a planet placed in the Solar System , which became placed in a Galaxy , which became placed in the Local Group of Galaxies , which became placed in an expanse so vast we call it just the Universe . ... Публикации с ключевыми словами: Earth - Y2K - millennium - структура Вселенной - Система мира Птолемея - Система мира Коперника - геоцентрическая система Мира . ... Земля в сумерках . Восход Земли . ...

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Network Working Group X. Liu Internet-Draft Ericsson Intended status: Standards Track I. Bryskin Expires: September 20, 2016 Huawei Technologies V. Beeram Juniper Networks T. Saad Cisco Systems Inc H. Shah Ciena O. Gonzalez de Dios Telefonica March 20, 2016 A YANG Data Model for Configuration Scheduling draft-liu-netmod-yang-schedule-00 Abstract This document describes a data model grouping for configuration scheduling. ... Liu, et al. ... Configuration Scheduling YANG Data Model Overview.. ...

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... We have already mentioned the policies that control various aspects of POA behaviour. ... Non-reentrant servants should only be activated in POAs with the SINGLE_THREAD_MODEL policy. ... Objects activated in this POA cannot outlive the server process. ... The POA maintains a map of active servants (the Active Object Map). ... USE_ACTIVE_OBJECT_MAP_ONLY . ... The Root POA has the ORB_CTRL_MODEL , TRANSIENT , UNIQUE_ID , SYSTEM_ID , RETAIN , USE_ACTIVE_OBJECT_MAP_ONLY and IMPLICIT_ACTIVATION policies....

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• Qt Toolkit - qwindowdefs.h include file
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INFORMATION MEASURE OF THE CORPORATE FINANCIAL INDICATORS T.V. Ryzhkova Plekhanov Russian University of Economics, 36 Stremjanni per., ... The corporate financial system consists of structured elements subsets of financial coefficients. The financial system division into two subsystems is defined. ... For the subset of the corporate financial coefficients a discreet information measure well known as the Shannon entropy for the multivariate random vector is used. ...

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• http://www.mce.biophys.msu.ru/archive/doc32738/doc.pdf
• http://www.mce.biophys.msu.ru/archive/doc31250/eng.pdf

In the first part of the book, a systemic concept of algal diversity is lais out. ... On this basis, a functional model of aquatic ecosystem is worked out and the critical levels of its development are defined. ... Second part of the book is a data base for algal species used as ecological markers (3193 species of algae). ... ALGAL INDICATORS AS ENVIRONMENTAL QUALITY. ... PART I. METHODOLODICAL ASPECTS OF BIOLOGICAL DIVERSITY ANALYSIS OF ALGAE . ... Critical state of aquatic ecosystem (P.39) . ...

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... Tear faults . ... Tectonic . ... Tectonic, collision, (see collisional tectonics) . ... Tectonic, extensional. (see extensional tectonics) . ... Tectonic, plate (see Plate tectonics) . ... Tectonic, regional, (see regional geology) . ... Tectonic, stress . ... Tensor, stress See Stress tensor . ... Thrust faults, in fold-thrust belts, (see fold-thrust belts) . ... Thrust sheet . ... Thrust-fault systems, fold-thrust belts, (see fold-thrust belts) . ... Transform faults, See also Strike slip faults ....

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